Table 4.
Statistics of repetitive elements.
| Class | Subclass | Number | Total length (bp) | % of genome |
|---|---|---|---|---|
| SINEs | 7689 | 1013259 | 0.08 | |
| LINEs | 122541 | 58287220 | 4.87 | |
| L2/CR1/Rex | 122320 | 58237288 | 4.86 | |
| L1/CIN4 | 93 | 21924 | 0.01 | |
| LTR elements | 28300 | 17870876 | 1.49 | |
| Retroviral | 28075 | 17832332 | 1.49 | |
| DNA transposons | 22902 | 3660969 | 0.31 | |
| hobo-Activator | 3590 | 640205 | 0.05 | |
| Tc1-IS630-Pogo | 630 | 116362 | 0.01 | |
| Tourist/Harbinger | 6973 | 698779 | 0.06 | |
| Unclassified | 3071 | 537460 | 0.04 | |
| Total interspersed repeats | 81369784 | 6.79 | ||
| Small RNA | 2810 | 409311 | 0.03 | |
| Satellites | 1368 | 291347 | 0.02 | |
| Simple repeats | 435729 | 20666486 | 1.73 | |
| Low complexity | 73734 | 4396338 | 0.37 | |
| Total bases masked | 106889620 | 8.92 |