Table 7.

Viral genomes reference-based

Sample number	Virus	Ct value	Read count	Median read length	Mean read quality	Coverage %10×	Coverage %15×	Coverage %20×	Coverage %30×
1	SARSCov-2 (BF.5)	20/22	19,795	2252	13.3	99.736	99.659	99.622	99.244
6	PIV3	32	145	1994	14	88.695	54.178	29.673	10.697
11	SARSCov2 (BA.2.3)	20	2419	1430	13.5	99.348	99.161	98.9	95.459
16	RSV	26	1508	1828	14	97.996	97.339	96.636	91.814
17	SARSCov2 (BE.1)	22/20	16,074	1875	14	99.746	99.656	99.639	99.385
19	RSVB	25	267	2153	14.4	93.327	85.471	80.532	62.03
22	RSVB	25	703	2001	13.3	97.366	95.573	94.713	92.131
23	PIV4	27	289	1508	13	84.782	71.616	58.621	31.985
40	RSVA	24.5	199	1878	13	84.798	65.655	52.615	28.071
42	Human coronavirus 229E	32	733	1974	13.48	98.148	97.529	96.273	85.91
43	SARScov2(BA.5.2)	25/27	2207	1880	13.4	98.582	98.305	97.88	96.836
44	Adenovirus	19	55,546	1494	13.4	99.941	99.932	99.904	99.884
47	PIV3	34	92	2255	14.5	60.115	35.597	10.257	0
20	PIV3	31	318	3229	14.3	74.589	70.36	59.785	59.779
49	SASRCoV2 (BQ.1)	19/21	35,545	2190	13.8	99.973	99.659	99.656	99.615
18	CMV	N/A	60,731	2452	13.9	96.84	96.62	96.523	96.088
P21	Bocaparvovirus	20	7248	1771.5	12.7	95.81	95.18	94.89	93.65
50	FluC	N/A	1	385	11.8	0	0	0	0
			112	1745	12.2	92.558	90.825	89.767	80.761
			56	1464	12.3	79.941	73.043	68.853	46.763
			62	1629.5	12.9	87.769	83.372	77.462	66.377
			42	1625.5	12.6	77.183	76.700	72.697	60.396
			25	1312	11.6	71.998	59.048	19.480	0.000
			4	553.5	12.8	0	0	0	0
51	FluA	18	67	1398	12.3	92.00	87.74	83.60	71.23
			4	865	12.6	0.00	0.00	0.00	0.00
			28	1262	13.0	83.57	75.12	60.12	0.00
			34	1149	12.5	76.63	67.82	59.45	18.20
			2	688	13.0	0.00	0.00	0.00	0.00
			420	1613.5	12.9	94.04	92.88	90.77	89.03
			298	1537	13.2	93.98	93.76	92.31	87.14
			347	1515	13.0	100	97.86	95.90	91.85