Antibodies |
|
Rabbit Polyclonal anti-KRT6A |
Proteintech |
Cat# 10590-1-AP; RRID: AB_2134306
|
Rabbit Polyclonal anti-S100A8 |
Proteintech |
Cat# 15792-1-AP; RRID: AB_10666315
|
Rabbit Monoclonal anti-αSMA |
Abcam |
Cat# ab124964; RRID: AB_11129103
|
Rabbit Monoclonal anti-Collagen 1A1 |
Cell Signaling Technology |
Cat# 72026; RRID: AB_2904565
|
Rabbit Monoclonal anti-FAK |
Abcam |
Cat# ab40794; RRID: AB_732300
|
Rabbit Monoclonal anti-phospho-FAK (Tyr 397) |
Cell Signaling Technology |
Cat# 8556; RRID: AB_10891442
|
Rabbit Monoclonal anti-Src |
Cell Signaling Technology |
Cat# 2123; RRID: AB_2106047
|
Rabbit Monoclonal anti-phospho-Src (Tyr 416) |
Cell Signaling Technology |
Cat# 6943; RRID: AB_10013641
|
Rabbit Polyclonal anti-CD31 |
Servicebio |
Cat# GB11063-2-100; RRID: AB_2922436
|
Rabbit Polyclonal anti-CXCL1 |
Proteintech |
Cat# 12335-1-AP; RRID: AB_2087568
|
Mouse Monoclonal anti-RhoA-GTP |
NewEast Biosciences |
Cat# 26904; RRID: AB_1961799
|
Rabbit Monoclonal anti-RhoA |
Cell Signaling Technology |
Cat# 2117; RRID: AB_10693922
|
Rabbit Monoclonal anti-ROCK1 |
Cell Signaling Technology |
Cat# 4035; RRID: AB_2238679
|
Rabbit Monoclonal anti-phospho-MLC2 (Ser 19) |
Cell Signaling Technology |
Cat# 3671; RRID: AB_330248
|
Rabbit Monoclonal anti-MLC2 |
Cell Signaling Technology |
Cat# 8505; RRID: AB_2728760
|
Rabbit Polyclonal anti-MRTF-A |
Proteintech |
Cat# 21166-1-AP; RRID: AB_2878822
|
Rabbit Polyclonal anti-CD147 |
Proteintech |
Cat# 11989-1-AP; RRID: AB_2290597
|
Rabbit Monoclonal anti-phospho-ERK1/2 (Thr 202/Tyr 204) |
Cell Signaling Technology |
Cat# 4370; RRID: AB_2315112
|
Rabbit Monoclonal anti-ERK1/2 |
Cell Signaling Technology |
Cat# 4695; RRID: AB_390779
|
Rabbit Monoclonal anti-cleaved-PARP (Asp 214) |
Cell Signaling Technology |
Cat# 5625; RRID: AB_10699459
|
Rabbit Monoclonal anti-cleaved-Caspase3 (Asp 175) |
Cell Signaling Technology |
Cat# 9661; RRID: AB_2341188
|
Rabbit Polyclonal anti-TFAP2A |
Proteintech |
Cat# 13019-3-AP; RRID: AB_2199414
|
Mouse Monoclonal anti-Vinculin |
Proteintech |
Cat# 66305-1-Ig; RRID: AB_2810300
|
Mouse Monoclonal anti-GAPDH |
Proteintech |
Cat# 60004-1-Ig; RRID: AB_2107436
|
Normal Rabbit IgG |
Cell Signaling Technology |
Cat# 2729; RRID: AB_1031062
|
Rabbit monoclonal anti-Histone H3 |
Cell Signaling Technology |
Cat# 4620; RRID: AB_1904005
|
Goat anti-rabbit IgG, HRP-linked |
Cell Signaling Technology |
Cat# 7074; RRID: AB_2099233
|
Horse anti-mouse IgG, HRP-linked |
Cell Signaling Technology |
Cat# 7076; RRID: AB_330924
|
|
Bacterial and virus strains |
|
S100A8 shRNA lentivirus |
Genechem |
N/A |
S100A8 overexpression lentivirus |
Genechem |
N/A |
CD147 Cas9-sgRNA lentivirus |
Genechem |
N/A |
|
Biological samples |
|
ESCC tumor specimens |
Linzhou Cancer Hospital |
See Table S1 for details |
|
Chemicals, peptides, and recombinant proteins |
|
DMEM |
Corning |
Cat# 10-013-CV |
Advanced DMEM/F12 |
Gibco |
Cat# 12634028 |
Fetal Bovine Serum |
Cell Technologies |
Cat# 30070 |
5-Fluorouracil |
MCE |
Cat# HY-90006 |
Cisplatin |
MCE |
Cat# HY-17394 |
Collagenase I |
Gibco |
Cat# 17100017 |
Collagenase IV |
Gibco |
Cat# 17104019 |
Hyaluronidase |
Sigma-Aldrich |
Cat# H1115000 |
B-27 |
Gibco |
Cat# 17504044 |
HEPES |
Gibco |
Cat# 15630080 |
GlutaMAX™ |
Gibco |
Cat# 35050061 |
EGF |
Gibco |
Cat# PMG8043 |
Y-27632 |
Selleck Chemicals |
Cat# S1049 |
A83-01 |
Tocris Bioscience |
Cat# 2939 |
Puromycin |
Gibco |
Cat# A1113803 |
Lipofectamine 2000 |
Invitrogen |
Cat# 11668027 |
AC-73 |
MCE |
Cat# HY-122214 |
Human recombinant S100A8 protein |
Novoprotein |
Cat# C794 |
Triton X-100 |
Solarbio |
Cat# T8200 |
|
Critical commercial assays |
|
RNA-Quick Purification Kit |
ES Science |
Cat# RN001 |
TB Green® Premix Ex Taq™II (Tli RNaseH Plus) |
TaKaRa |
Cat# RR820A |
Masson’s Trichrome Stain Kit |
Solarbio |
Cat# G1340 |
Meilunbio® FGSuper Sensitive ECL Luminescence Reagent |
Meilunbio |
Cat# MA0186-1 |
Pierce™ Rapid Gold BCA |
Thermo Fisher Scientific |
Cat# A53226
|
Human S100A8/S100A9 ELISA Kit |
Proteintech |
Cat# KE00177 |
Opal 5-Color Manual IHC Kit |
PANOVUE |
Cat# 10144100100 |
SimpleChIP® Plus Sonication Chromatin IP Kit |
Cell Signaling Technology |
Cat# 56383 |
|
Deposited data |
|
RNA-seq data of PDX mice |
This paper |
GSA: CRA013775
|
RNA-seq data of PDX donors |
Yang et al.25
|
GSA: HRA004329
|
ESCC scRNA-seq data |
Zhang et al.20
|
GEO: GSE160269
|
|
Experimental models: Cell lines |
|
KYSE450 |
Dr. Y. Shimada |
JCRB1430 |
KYSE510 |
Dr. Y. Shimada |
JCRB1436 |
KYSE180 |
Dr. Y. Shimada |
JCRB1083 |
Human esophageal cancer associated fibroblasts (ECAFs) |
This paper |
N/A |
PDX-derived primary tumor cells (PDCs) |
This paper |
N/A |
|
Experimental models: Organisms/strains |
|
NSG mouse |
BEIJING IDMO Co., Ltd |
N/A |
|
Oligonucleotides |
|
shRNA sequences, see Table S2
|
Genechem |
N/A |
sgRNA sequences, see Table S2
|
Genechem |
N/A |
siRNA, see Table S2
|
JTSBIO Co.,Ltd (Wuhan, China) |
N/A |
qRT-PCR primers, see Table S3
|
Tsingke Biotechnology |
N/A |
|
Software and algorithms |
|
R 4.2.2 |
R Core Team |
https://www.R-project.org/ |
Trim Galore (version 0.6.6) |
Felix Krueger |
https://github.com/FelixKrueger/TrimGalore |
Disambiguate (version 1.0) |
Ahdesmäki et al.35
|
https://github.com/AstraZeneca-NGS/disambiguate |
Salmon (version 1.2.0) |
Patro et al.84
|
https://combine-lab.github.io/salmon/ |
DESeq2 (version 1.38.3) |
Love et al.85
|
https://bioconductor.org/packages/DESeq2/ |
tximport (version 1.26.1) |
Soneson et al.86
|
https://bioconductor.org/packages/tximport/ |
clusterProfiler (version 4.6.2) |
Wu et al.87
|
https://github.com/YuLab-SMU/clusterProfiler |
Seurat (version 4.3.0) |
Hao et al.88
|
https://github.com/satijalab/seurat |
Harmony (version 0.1.1) |
Korsunsky et al.89
|
https://github.com/immunogenomics/harmony |
CellChat (version 1.6.1) |
Jin et al.90
|
https://github.com/sqjin/CellChat |
survminer (version 0.4.9) |
Kassambara et al. |
https://github.com/kassambara/survminer |
ImageJ |
NIH |
https://imagej.nih.gov/ij/ |
Prism 8.0 |
GraphPad |
http://www.graphpad.com/ |