Antibodies |
|
Anti-human CD2 |
BD Biosciences |
Cat#: 555326; RRID: AB_395733
|
Anti-human CD3 |
BD Biosciences |
Cat#: 349201; RRID: AB_400405
|
Anti-human CD4 |
ThermoFisher |
Cat#: MHCD0401; RRID:AB_10392546
|
Anti-human CD7 |
BioLegend |
Cat#: 343104; RRID: AB_1659216
|
Anti-human CD11b |
ThermoFisher |
Cat#: 11-0118-42; RRID: AB_1582242
|
anti-human CD14 |
BD Biosciences |
Cat#: 347493; RRID: AB_400311
|
Anti-human CD19 |
BD Biosciences |
Cat#: 340409; RRID: AB_400024
|
Anti-human CD20 |
BD Biosciences |
Cat#: 555622; RRID: AB_395988
|
Anti-human CD33 |
ThermoFisher |
Cat#: 11-0337-42; RRID: AB_1603221
|
Anti-human CD56 |
BD Biosciences |
Cat#: 562794; RRID: AB_2737799
|
Anti-human CD235 |
BD Biosciences |
Cat#: 559943; RRID: AB_397386
|
Anti-human CD34 |
BD Biosciences |
Cat#: 562577; RRID: AB_2687922
|
Anti-human CD38 |
BioLegend |
Cat#: 303534; RRID: AB_2561605
|
Anti-human CD3 |
BioLegend |
Cat#: 317339; RRID: AB_2563407
|
Anti-human CD4 |
BioLegend |
Cat#: 300502; RRID: AB_314070
|
Anti-human CD8 |
BioLegend |
Cat#: 344710; RRID: AB_2044010
|
Anti-human CD56 |
BioLegend |
Cat#: 362544; RRID: AB_2565922
|
Anti-human CD16 |
BioLegend |
Cat#: 302028; RRID: AB_893262
|
Anti-Human IFN-γ |
BD Biosciences |
Cat#: 554702; RRID: AB_398580
|
Anti-human Perforin |
BioLegend |
Cat#: 308130; RRID: AB_2687190
|
Zombie UV |
BioLegend |
Cat#: 423107 |
Protein Transport Inhibitor Cocktail |
eBioscience |
Cat#: 00-4980-93 |
Fc Receptor Binding Inhibitor Polyclonal Antibody |
ThermoFisher |
Cat#: 14-9161-73 |
CD3e |
Cell Signaling Technology |
Cat#: 85061BF; RRID: AB_2721019
|
CD4 |
Abcam |
Cat#: ab133616; RRID: AB_2750883
|
CD8 |
Thermo Scientific |
Catalog#: MA5-13473; RRID: AB_11000353
|
CD14 |
Abcam |
Cat#: ab183322; RRID: AB_2909463
|
CD68, Clone PG-M1 |
Dako |
Cat#: M0876; RRID: AB_2074844
|
CD56 |
Dako |
Cat#: M7304; RRID: AB_2750583
|
DAPI |
Akoya Biosciences |
Cat#: FP1490; RRID: N/A |
MCL1 |
Cell Signaling Technology |
Cat#: 4572; RRID:AB_2281980
|
Vinculin |
Sigma-Aldrich |
Cat#: V9131; RRID:AB_477629
|
|
Biological samples |
|
Bone marrow aspirates from healthy donors |
AllCells (Alameda, CA) and MD Anderson’s Department of Stem Cell Transplantation |
N/A |
Bone marrow aspirates from CMML patients |
MD Anderson Bank |
N/A |
Human bone marrow-derived mesenchymal stem cells |
Cells provided by Dr. M. Andreeff |
N/A |
|
Chemicals, peptides, and recombinant proteins |
|
AMG-176 |
Med Chem Express |
Cat#: HY-101565 |
|
Critical commercial assays |
|
Cytofix/Cytoperm kit |
BD Biosciences |
Cat#: 554714 |
|
Deposited data |
|
scRNA-seq data |
This paper |
GEO: GSE218390
|
scATAC-seq data |
This paper |
GEO: GSE218390
|
scDNA-seq data |
This paper |
GEO: GSE218390
|
|
Experimental models: Cell lines |
|
K562 cells |
ATCC |
ATCC CCL243 |
|
Software and algorithms |
|
SPSS 23.0 |
SPSS, Inc |
https://www.ibm.com/products/spss-statistics |
R v4.1.2 |
R Core Team |
https://www.r-project.org |
Seurat v4 R package ‘ |
Hao et al.50
|
https://github.com/satijalab/seurat |
CellphoneDB |
Vento-Tormo et al.51
|
https://www.cellphonedb.org/ |
GraphPad Prism version 10.0 |
GraphPad software |
https://www.graphpad.com/ |
Spotfire |
TIBCO |
N/A |
FlowJo |
BD Biosciences |
https://www.flowjo.com/ |
GSEA |
Metascape |
https://metascape.org/ |
Spotfire |
TIBCO |
https://www.spotfire.com/ |
|
Other |
|
Ficoll-Paque PLUS |
ThermoFisher |
Cat#:45-001-752 |
CD34 Microbead Kit |
Miltenyi Biotec |
Cat#:130-046-702 |
NK Cell Isolation Kit |
Miltenyi Biotec |
Cat#: 130-092-657 |
Opal 9 Kit |
Akoya Biosciences |
Cat#: NEL797001KT |
Qubit |
Thermo Fisher Scientific |
N/A |