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. 2024 May 22;5(6):101585. doi: 10.1016/j.xcrm.2024.101585
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Anti-human CD2 BD Biosciences Cat#: 555326; RRID: AB_395733
Anti-human CD3 BD Biosciences Cat#: 349201; RRID: AB_400405
Anti-human CD4 ThermoFisher Cat#: MHCD0401; RRID:AB_10392546
Anti-human CD7 BioLegend Cat#: 343104; RRID: AB_1659216
Anti-human CD11b ThermoFisher Cat#: 11-0118-42; RRID: AB_1582242
anti-human CD14 BD Biosciences Cat#: 347493; RRID: AB_400311
Anti-human CD19 BD Biosciences Cat#: 340409; RRID: AB_400024
Anti-human CD20 BD Biosciences Cat#: 555622; RRID: AB_395988
Anti-human CD33 ThermoFisher Cat#: 11-0337-42; RRID: AB_1603221
Anti-human CD56 BD Biosciences Cat#: 562794; RRID: AB_2737799
Anti-human CD235 BD Biosciences Cat#: 559943; RRID: AB_397386
Anti-human CD34 BD Biosciences Cat#: 562577; RRID: AB_2687922
Anti-human CD38 BioLegend Cat#: 303534; RRID: AB_2561605
Anti-human CD3 BioLegend Cat#: 317339; RRID: AB_2563407
Anti-human CD4 BioLegend Cat#: 300502; RRID: AB_314070
Anti-human CD8 BioLegend Cat#: 344710; RRID: AB_2044010
Anti-human CD56 BioLegend Cat#: 362544; RRID: AB_2565922
Anti-human CD16 BioLegend Cat#: 302028; RRID: AB_893262
Anti-Human IFN-γ BD Biosciences Cat#: 554702; RRID: AB_398580
Anti-human Perforin BioLegend Cat#: 308130; RRID: AB_2687190
Zombie UV BioLegend Cat#: 423107
Protein Transport Inhibitor Cocktail eBioscience Cat#: 00-4980-93
Fc Receptor Binding Inhibitor Polyclonal Antibody ThermoFisher Cat#: 14-9161-73
CD3e Cell Signaling Technology Cat#: 85061BF; RRID: AB_2721019
CD4 Abcam Cat#: ab133616; RRID: AB_2750883
CD8 Thermo Scientific Catalog#: MA5-13473; RRID: AB_11000353
CD14 Abcam Cat#: ab183322; RRID: AB_2909463
CD68, Clone PG-M1 Dako Cat#: M0876; RRID: AB_2074844
CD56 Dako Cat#: M7304; RRID: AB_2750583
DAPI Akoya Biosciences Cat#: FP1490; RRID: N/A
MCL1 Cell Signaling Technology Cat#: 4572; RRID:AB_2281980
Vinculin Sigma-Aldrich Cat#: V9131; RRID:AB_477629

Biological samples

Bone marrow aspirates from healthy donors AllCells (Alameda, CA) and MD Anderson’s Department of Stem Cell Transplantation N/A
Bone marrow aspirates from CMML patients MD Anderson Bank N/A
Human bone marrow-derived mesenchymal stem cells Cells provided by Dr. M. Andreeff N/A

Chemicals, peptides, and recombinant proteins

AMG-176 Med Chem Express Cat#: HY-101565

Critical commercial assays

Cytofix/Cytoperm kit BD Biosciences Cat#: 554714

Deposited data

scRNA-seq data This paper GEO: GSE218390
scATAC-seq data This paper GEO: GSE218390
scDNA-seq data This paper GEO: GSE218390

Experimental models: Cell lines

K562 cells ATCC ATCC CCL243

Software and algorithms

SPSS 23.0 SPSS, Inc https://www.ibm.com/products/spss-statistics
R v4.1.2 R Core Team https://www.r-project.org
Seurat v4 R package ‘ Hao et al.50 https://github.com/satijalab/seurat
CellphoneDB Vento-Tormo et al.51 https://www.cellphonedb.org/
GraphPad Prism version 10.0 GraphPad software https://www.graphpad.com/
Spotfire TIBCO N/A
FlowJo BD Biosciences https://www.flowjo.com/
GSEA Metascape https://metascape.org/
Spotfire TIBCO https://www.spotfire.com/

Other

Ficoll-Paque PLUS ThermoFisher Cat#:45-001-752
CD34 Microbead Kit Miltenyi Biotec Cat#:130-046-702
NK Cell Isolation Kit Miltenyi Biotec Cat#: 130-092-657
Opal 9 Kit Akoya Biosciences Cat#: NEL797001KT
Qubit Thermo Fisher Scientific N/A