Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2024 Jul 8;24:250. doi: 10.1186/s12866-024-03406-1

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

© The Author(s) 2024

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

PMC Copyright notice

Fig. 2 — Maximum likelihood phylogenetic tree of Escherichia coli strains isolated from humans between 2013 and 2022 in selected African countries. The core-genome phylogenetic tree was drawn from 181 genomes with BV-BRC and annotated with iTOL. The tree was built with E. coli K12-MG1655 as the reference genome and rooted with the reference strain. The following metadata are indicated: the country of isolation on the inner colored ring, the year of isolation in the middle and the MLST in (isolates with unknown STs are indicated U) on the outer ring. Isolates from this study are labelled with green background (isolates from patients) and blue background (isolates from environment)