Table 2.
A. pittii plasmids.
| Accession_number | Strain | Plasmid_name | Plasmid-size | Rep_protein | Accessions_CDD | Protein_ID | Lineage | |
|---|---|---|---|---|---|---|---|---|
| 1 | NZ_AGFH01000030.1 | D499 | pAB_D499 | 47,101 | NI | PLP_1 | ||
| 2 | NZ_CM001802.1 | XM1570 | pMX1 | 47,274 | NI | PLP_1 | ||
| 3 | NZ_MDHV02000003.1 | UKK-0265 | pGIM1_UKK-0265 | 39,562 | NI | PLP_1 | ||
| 4 | NZ_MDHX02000003.1 | UKK-0432 | pNDM1_UKK-0432 | 48,580 | NI | PLP_1 | ||
| 5 | NZ_MDIR02000003.1 | UKK-0553 | pGIM1_UKK-0553 | 43,536 | NI | PLP_1 | ||
| 6 | NZ_MDIS02000003.1 | UKK-0554 | pGIM1_UKK-0554 | 42,583 | NI | PLP_1 | ||
| 7 | NZ_MDIB02000003.1 | UKK-0538 | pNDM1_UKK-0538 | 47,278 | NI | PLP_1 | ||
| 8 | NZ_MDIU02000005.1 | UKK-0556 | pGIM1_UKK-0556 | 43,772 | NI | PLP_1 | ||
| 9 | NZ_MDIC02000004.1 | UKK-0539 | pNDM1_UKK-0539 | 49,842 | NI | PLP_1 | ||
| 10 | NZ_MDIK02000003.1 | UKK-0547 | pVIM2_UKK-0547 | 46,530 | NI | PLP_1 | ||
| 11 | NZ_MDIM02000003.1 | UKK-0548 | pVIM2_UKK-0548 | 45,234 | NI | PLP_1 | ||
| 12 | NZ_MDID02000002.1 | UKK-0540 | pNDM1_UKK-0540 | 46,164 | NI | PLP_1 | ||
| 13 | NZ_MDIT02000009.1 | UKK-0555 | pGIM1_UKK-0555 | 42,583 | NI | PLP_1 | ||
| 14 | NZ_CM001803.1 | XM1570 | pMX2 | 93,891 | Rep_3-DUF5710 | pfam01051,cl44662 | WP_000064928.1 | PLP_2 |
| 15 | NZ_CP026087.2 | WCHAP005069 | p1_005069 | 91,563 | Rep_3-DUF5710 | pfam01051,cl44662 | WP_000064928.1 | PLP_2 |
| 16 | NZ_CP027247.2 | WCHAP100004 | p1_100004 | 66,765 | Rep_3-DUF5710 | pfam01051, cl44662 | WP_000064928.1 | PLP_2 |
| 17 | NZ_CP027251.3 | WCHAP100020 | p1_100020 | 77,340 | Rep_3-DUF5710 | pfam01051, cl44662 | WP_000064928.1 | PLP_2 |
| 18 | NZ_CP042366.1 | C54 | pC54_002 | 76,008 | Rep_3-DUF5710 | pfam01051, cl44662 | WP_000064928.1 | PLP_2 |
| 19 | NZ_CP043054.1 | AP43 | pAP43-2 | 92,276 | Rep_3-DUF5710 | pfam01051, cl44662 | WP_000064928.1 | PLP_2 |
| 20 | NZ_CP069506.1 | FDAARGOS_1215 | unnamed2 | 94,379 | Rep_3-DUF5710 | pfam01051, cl44662 | WP_000064928.1 | PLP_2 |
| 21 | NZ_CP069540.1 | FDAARGOS_1214 | unnamed3 | 94,387 | Rep_3-DUF5710 | pfam01051, cl44662 | WP_000064928.1 | PLP_2 |
| 22 | NZ_CP077304.1 | FDAARGOS_1396 | unnamed1 | 94,386 | Rep_3-DUF5710 | pfam01051,cl44662 | WP_000064928.1 | PLP_2 |
| 23 | NZ_CP139277.1 | AN37 | pApiAN37f | 85,134 | Rep_3-DUF5711 | pfam01051,cl44663 | WP_000064928.1 | PLP_2 |
| 24 | NZ_CP084922.1 | CEP14 | pCEP14_01 | 95,483 | Rep_3-DUF5710 | pfam01051, cl44662 | WP_000064928.1 | PLP_2 |
| 25 | NZ_CP027252.3 | WCHAP100020 | p2_100020 | 9,132 | RepM_Acin | cl45741 | WP_005804946.1 | PLP_3 |
| 26 | NZ_CP069497.1 | FDAARGOS_1217 | unnamed1 | 9,060 | RepM_Acin | cI45741 | WP_005804946.1 | PLP_3 |
| 27 | NZ_CP069507.1 | FDAARGOS_1215 | unnamed3 | 9,084 | RepM_Acin | cl45741 | WP_005804946.1 | PLP_3 |
| 28 | NZ_CP069538.1 | FDAARGOS_1214 | unnamed1 | 9,132 | RepM_Acin | cl45741 | WP_005804946.1 | PLP_3 |
| 29 | NZ_CP077306.1 | FDAARGOS_1396 | unnamed3 | 9,038 | NI | PLP_3 | ||
| 30 | NZ_CP118935.1 | ML4 | pML4-2 | 9,131 | RepM_Acin | cI45741 | WP_005804946.1 | PLP_3 |
| 31 | NZ_MDIB02000004.1 | UKK-0538 | p4_UKK-0538 | 8,804 | NI | PLP_4 | ||
| 32 | NZ_MDIK02000005.1 | UKK-0547 | p5_UKK-0547 | 8,804 | NI | PLP_4 | ||
| 33 | NZ_MDIM02000007.1 | UKK-0548 | p7_UKK-0548 | 8,804 | NI | PLP_4 | ||
| 34 | NZ_CP029611.1 | ST220 | unnamed | 84,302 | RepM_Acin | cl45741 | WP_002046604.1 | PLP_5 |
| 35 | NZ_CP095408.1 | TCM | pTCM-1 | 84,108 | RepM_Acin | cI45741 | WP_002046604.1 | PLP_5 |
| 36 | NZ_CP123766.1 | AP8900 | pAP8900-1 | 86,394 | RepM_Acin | cI45741 | WP_002046604.1 | PLP_5 |
| 37 | NZ_CP069505.1 | FDAARGOS_1215 | unnamed1 | 11,158 | RepM_Acin | cl45741 | WP_005065049.1 | PLP_6 |
| 38 | NZ_CP077240.1 | FDAARGOS_1399 | unnamed2 | 9,581 | RepM_Acin | cl45741 | WP_005065049.1 | PLP_6 |
| 39 | NZ_CP139289.1 | 564 U | pApi564 Ua | 11,158 | RepM_Acin | cl45741 | WP_005065049.1 | PLP_6 |
| 40 | NZ_CP139273.1 | HCG62 | pApiHCG62b | 11,158 | RepM_Acin | cl45741 | WP_005065049.1 | PLP_6 |
| 41 | NZ_CP139256.1 | MCR16048 | pApiMCR16048b | 11,158 | RepM_Acin | cl45741 | WP_005065049.1 | PLP_6 |
| 42 | NZ_AP024801.1 | OCU_Ac17 | pOCUAc17-3 | 11,158 | RepM_Acin | cI45741 | WP_005065049.1 | PLP_6 |
| 43 | NZ_CP028569.1 | WCHAP005046 | p1_005046 | 121,612 | RepM_Acin | cl45741 | WP_000818856.1 | PLP_7 |
| 44 | NZ_CP077239.1 | FDAARGOS_1399 | unnamed1 | 108,027 | RepM_Acin | cl45741 | WP_000818856.1 | PLP_7 |
| 45 | NZ_CP118934.1 | ML4 | pML4-1 | 99,281 | RepM_Acin | cl45741 | WP_000818856.1 | PLP_7 |
| 46 | NZ_CP095409.1 | TCM | pTCM-2 | 11,346 | RepM_Acin | cI45741 | WP_005133531.1 | PLP_8 |
| 47 | NZ_CP123769.1 | AP8900 | pAP8900-4 | 11,346 | RepM_Acin | cI45741 | WP_005133531.1 | PLP_8 |
| 48 | NZ_CP026088.1 | WCHAP005069 | p2_005069 | 9,203 | RepM_Acin | cl45741 | WP_000845851.1 | PLP_9 |
| 49 | NZ_CP043055.1 | AP43 | pAP43-3 | 9,203 | RepM_Acin | cl45741 | WP_000845851.1 | PLP_9 |
| 50 | NZ_CP069508.1 | FDAARGOS_1215 | unnamed4 | 11,469 | RepM_Acin | cI45741 | WP_005237331.1 | PLP_10 |
| 51 | NZ_CP077305.1 | FDAARGOS_1396 | unnamed2 | 11,469 | RepM_Acin | cl45741 | WP_005237331.1 | PLP_10 |
| 52 | NZ_CP087718.1 | AP2044 | pAP2044-2 | 43,577 | RepM_Acin | cl45741 | WP_004843977.1 | PLP_11 |
| CyRepA1 | cl26703, cl28734 | WP_069120316 | ||||||
| 53 | NZ_CP123767.1 | AP8900 | pAP8900-2 | 43,600 | RepM_Acin | cI45741 | WP_004843977.1 | PLP_11 |
| 54 | NZ_CP026086.2 | WCHAP005069 | pOXA58_005069 | 112,436 | RepM_Acin | cl45741 | WP_000845851.1 | PLP_12 |
| RepM_Acin | cl45741 | WP_002046604.1 | ||||||
| 55 | NZ_CP027249.2 | WCHAP100004 | pOXA58_100004 | 105,591 | RepM_Acin | cl45741 | WP_002046604.1 | PLP_12 |
| 56 | NZ_MDIK02000007.1 | UKK-0547 | p7_UKK-0547 | 6,078 | NI | PLP_13 | ||
| 57 | NZ_CP095411.1 | TCM | pTCM-4 | 6,078 | NI | PLP_13 | ||
| 58 | NZ_CP027660.1 | Ap-W20 | pApW20-2 | 147,574 | RepM_Acin | cI45741 | WP_002046604.1 | PLP_14 |
| 59 | NZ_CP029007.1 | AbW39 | pAbW39-2 | 149,504 | RepM_Acin | cI45741 | WP_005065049.1 | PLP_14 |
| RepM_Acin | cI45741 | WP_002046604.1 | ||||||
| 60 | NZ_CP027659.1 | Ap-W20 | pApW20-1 | 237,519 | NI | PLP_15 | ||
| 61 | NZ_CP029006.1 | AbW39 | pAbW39-1 | 262,817 | NI | PLP_15 | ||
| 62 | NZ_CP021429.1 | HUMV-6483 | p11 | 112,604 | RepM_Acin | cl45741 | WP_002046604.1 | PLP_16 |
| 63 | NZ_CP139267.1 | HUM14 | pApiHUM14c | 115,839 | RepM_Acin | cl45741 | WP_002046604.1 | PLP_16 |
| 64 | NZ_AP021938.1 | WP2-W18-ESBL-11 | pWP2-W18-ESBL-11_2 | 10,416 | RepM_Acin | cl45741 | WP_182918118.1 | PLP_17 |
| 65 | NZ_CP139260.1 | HUM3 | pApiHUM3b | 10,476 | RepM_Acin | cl45741 | WP_005065049.1 | PLP_17 |
| 66 | NZ_AP021937.1 | WP2-W18-ESBL-11 | pWP2-W18-ESBL-11_1 | 87,428 | RepM_Acin | cI45741 | WP_002046604.1 | ORPHAN |
| 67 | NZ_AP021939.1 | WP2-W18-ESBL-11 | pWP2-W18-ESBL-11_3 | 2,726 | Rep_1 | cl2412 | WP_001180320.1 | ORPHAN |
| 68 | NZ_AP024799.1 | OCU_Ac17 | pOCUAc17-1 | 69,156 | Rep_3-DUF5710 | pfam01051, cl44662 | WP_004795963.1 | ORPHAN |
| 69 | NZ_AP024800.1 | OCU_Ac17 | pOCUAc17-2 | 15,601 | RepM_Acin | cl45741 | WP_004763412.1 | ORPHAN |
| 70 | NZ_CP014478.1 | AP_882 | pNDM-AP_882 | 146,597 | NI | ORPHAN | ||
| 71 | NZ_CP014479.1 | AP_882 | pOXA58-AP_882 | 36,862 | RepM_Acin | cl45741 | WP_005804946.1 | ORPHAN |
| 72 | NZ_CP015146.1 | IEC338SC | pIEC338SCOX | 10,498 | RepM_Acin | cl45741 | WP_012780181.1 | ORPHAN |
| 73 | NZ_CP015147.1 | IEC338SC | pIEC338SC2 | 5,562 | RepM_Acin | cl45741 | WP_063099738.1 | ORPHAN |
| 74 | NZ_CP015148.1 | IEC338SC | pIEC338SC3 | 5,813 | RepM_Acin | cl45741 | WP_063099746.1 | ORPHAN |
| 75 | NZ_CP017939.1 | YMC2010/8/T346 | unnamed1 | 28,641 | II | cl31812 | WP_078220828.1 | ORPHAN |
| 76 | NZ_CP018910.1 | XJ88 | unnamed1 | 9,501 | NI | ORPHAN | ||
| 77 | NZ_CP027248.1 | WCHAP100004 | p2_100004 | 18,485 | RepM_Acin | cl45741 | WP_004698334.1 | ORPHAN |
| 78 | NZ_CP027253.1 | WCHAP100020 | pOXA58_100020 | 24,018 | RepM_Acin | cl45741 | WP_002046604.1 | ORPHAN |
| 79 | NZ_CP027661.1 | Ap-W20 | pApW20-3 | 8,123 | RepM_Acin | cI45741 | WP_252618463.1 | ORPHAN |
| 80 | NZ_CP027662.1 | Ap-W20 | pAP2044-4 | 7,680 | RepM_Acin | cI45741 | WP_005065049.1 | ORPHAN |
| 81 | NZ_CP028570.1 | WCHAP005046 | p2_005046 | 10,472 | RepM_Acin | cl45741 | WP_005804946.1 | ORPHAN |
| 82 | NZ_CP028571.1 | WCHAP005046 | p3_005046 | 4,771 | Replicase-PriCT-HTH-23 | cl03886, cl07362, pfam13384 | WP_057082420.1 | ORPHAN |
| 83 | NZ_CP028572.2 | WCHAP005046 | p4_005046 | 2,295 | Rep_1 | cl2412 | WP_032071712.1 | ORPHAN |
| 84 | NZ_CP028573.2 | WCHAP005046 | pOXA58_005046 | 61,751 | RepM_Acin | cl45741 | WP_002046604.1 | ORPHAN |
| 85 | NZ_CP040912.1 | AB17H194 | pAB17H194–1 | 88,002 | Rep_3-DUF5710 | pfam01051, cl44662 | WP_150378260.1 | ORPHAN |
| 86 | NZ_CP040913.1 | AB17H194 | pAB17H194–2 | 76,962 | RepM_Acin | cl45741 | WP_002046604.1 | ORPHAN |
| 87 | NZ_CP042365.1 | C54 | pC54_001 | 256,887 | NI | ORPHAN | ||
| 88 | NZ_CP042367.1 | C54 | pC54_003 | 25,906 | RepM_Acin | cl45741 | WP_114225253.1 | ORPHAN |
| 89 | NZ_CP042368.1 | C54 | pC54_004 | 6,575 | Rep_3 | pfam01051 | WP_001031297.1 | ORPHAN |
| 90 | NZ_CP042369.1 | C54 | pC54_005 | 4,478 | NI | ORPHAN | ||
| 91 | NZ_CP043053.1 | AP43 | pAP43-OXA58-NDM1 | 268,263 | NI | ORPHAN | ||
| 92 | NZ_CP049807.1 | A1254 | pA1254_1 | 37,834 | RepM_Acin | cl45741 | WP_167564445.1 | ORPHAN |
| 93 | NZ_CP049808.1 | A1254 | pA1254_2 | 35,317 | Rep_3 | pfam01051 | WP_167564503.1 | ORPHAN |
| 94 | NZ_CP049809.1 | A1254 | pA1254_3 | 11,248 | RepM_Acin | cl45741 | WP_005133531.1 | ORPHAN |
| 95 | NZ_CP049810.1 | A1254 | pA1254_4 | 11,269 | RepM_Acin | cl45741 | WP_005804946.1 | ORPHAN |
| 96 | NZ_CP054138.1 | JXA13 | pHNJXA13-1 | 206,931 | NI | ORPHAN | ||
| 97 | NZ_CP069498.1 | FDAARGOS_1217 | unnamed2 | 128,321 | RepM_Acin | cl45741 | WP_000818856.1 | ORPHAN |
| 98 | NZ_CP069539.1 | FDAARGOS_1214 | unnamed2 | 4,178 | RepM_Acin | cl45741 | WP_016803254.1 | ORPHAN |
| 99 | NZ_CP077241.1 | FDAARGOS_1399 | unnamed3 | 8,485 | RepM_Acin | cl45741 | WP_216972120.1 | ORPHAN |
| 100 | NZ_CP077307.1 | FDAARGOS_1396 | unnamed4 | 5,594 | NI | ORPHAN | ||
| 101 | NZ_CP084923.1 | CEP14 | pCEP14_02 | 58,452 | RepM_Acin | cI45741 | WP_005804946.1 | ORPHAN |
| RepM_Acin | cI45741 | WP_005804946.1 | ||||||
| RepM_Acin | cI45741 | WP_005804946.1 | ||||||
| RepM_Acin | cI45741 | WP_005065049.1 | ||||||
| RepM_Acin | cI45741 | WP_005065049.1 | ||||||
| 102 | NZ_CP084924.1 | CEP14 | pCEP14_03 | 89,672 | RepM_Acin | cl45741 | WP_004843977.1 | ORPHAN |
| CyRepA1 | cl26703, cl28734 | WP_226789443.1 | ||||||
| 103 | NZ_CP087717.1 | AP2044 | pAP2044-1 | 283,349 | NI | ORPHAN | ||
| 104 | NZ_CP095410.1 | TCM | pTCM-3 | 8,505 | Rep_3 | pfam01051 | WP_004728629.1 | ORPHAN |
| 105 | NZ_CP107290.1 | BM4623 | p1 | 9,811 | RepM_Acin | cI45741 | WP_187406175.1 | ORPHAN |
| 106 | NZ_CP123768.1 | AP8900 | pAP8900-3 | 12,558 | RepM_Acin | cI45741 | WP_199953184.1 | ORPHAN |
| 107 | NZ_CP069541.1 | FDAARGOS_1214 | unnamed4 | 4,546 | NI | ORPHAN | ||
| 108 | NZ_MDIM02000005.1 | UKK-0548 | p5_UKK-0548 | 11,025 | RepM_Acin | cl45741 | WP_171258818.1 | ORPHAN |
| 109 | NZ_CP139250.1 | MCR8900 | pApiMCR8900a | 7,614 | RepM_Acin | cl45741 | WP_000845851.1 | ORPHAN |
| 110 | NZ_CP139252.1 | MCR53 | pApiMCR53c | 23,644 | RepM_Acin | cl45741 | WP_069122403.1 | ORPHAN |
| 111 | NZ_CP139253.1 | MCR53 | pApiMCR53b | 4,208 | RepM_Acin | cl45741 | WP_320562525.1 | ORPHAN |
| 112 | NZ_CP139254.1 | MCR53 | pApiMCR53a | 3,916 | NI | ORPHAN | ||
| 113 | NZ_CP139257.1 | MCR16048 | pApiMCR16048a | 8,123 | RepM_Acin | cl45741 | WP_026441267.1 | ORPHAN |
| 114 | NZ_CP139259.1 | HUM3 | pApiHUM3c | 138,669 | RepM_Acin | cl45741 | WP_002046604.1 | ORPHAN |
| 115 | NZ_CP139261.1 | HUM3 | pApiHUM3a | 9,973 | RepM_Acin | cl45741 | WP_199982916.1 | ORPHAN |
| 116 | NZ_CP139263.1 | HUM1 | pApiHUM1c | 98,706 | RepM_Acin | cl45741 | WP_240296649.1 | ORPHAN |
| 117 | NZ_CP139264.1 | HUM1 | pApiHUM1b | 22,476 | RepM_Acin | cl45741 | WP_005804946.1 | ORPHAN |
| RepM_Acin | cl45741 | WP_032066855.1 | ||||||
| 118 | NZ_CP139265.1 | HUM1 | pApiHUM1a | 8,928 | RepM_Acin | cl45741 | WP_004896921.1 | ORPHAN |
| 119 | NZ_CP139268.1 | HUM14 | pApiHUM14b | 5,882 | RepM_Acin | cl45741 | WP_104039705.1 | ORPHAN |
| 120 | NZ_CP139269.1 | HUM14 | pApiHUM14a | 5,168 | RepM_Acin | cl45741 | WP_005065049.1 | ORPHAN |
| 121 | NZ_CP139271.1 | HCG62 | pApiHCG62d | 100,717 | RepM_Acin | cl45741 | WP_000818856.1 | ORPHAN |
| 122 | NZ_CP139272.1 | HCG62 | pApiHCG62c | 57,394 | Rep_3-DUF5710 | pfam01051, cl44662 | WP_034700330.1 | ORPHAN |
| 123 | NZ_CP139274.1 | HCG62 | pApiHCG62a | 5,688 | RepM_Acin | cl45741 | WP_001208778.1 | ORPHAN |
| 124 | NZ_CP139278.1 | AN37 | pApiAN37d | 10,491 | RepM_Acin | cl45741 | WP_006582659.1 | ORPHAN |
| 125 | NZ_CP139279.1 | AN37 | pApiAN37c | 5,061 | RepM_Acin | cl45741 | WP_004698334.1 | ORPHAN |
| 126 | NZ_CP139280.1 | AN37 | pApiAN37b | 4,741 | Replicase-PriCT | cl03886, cl07362 | WP_320561151.1 | ORPHAN |
| 127 | NZ_CP139281.1 | AN37 | pApiAN37a | 3,964 | Rep_1 | cl02412 | WP_086230553.1 | ORPHAN |
| 128 | NZ_CP139283.1 | AE13 | pApiAE13c | 202,864 | NI | ORPHAN | ||
| 129 | NZ_CP139284.1 | AE13 | pApiAE13b | 10,109 | RepM_Acin | cl45741 | WP_032066855.1 | ORPHAN |
| 130 | NZ_CP139285.1 | AE13 | pApiAE13a | 4,280 | RepM_Acin | cl45741 | WP_032859646.1 | ORPHAN |
| 131 | NZ_CP139288.1 | 564 U | pApi564 Ub | 64,705 | RepM_Acin | cl45741 | WP_002046604.1 | ORPHAN |
| 132 | NZ_CP139289.1 | 564 U | pApi564 Ua | 11,158 | RepM_Acin | cl45741 | WP_005065049.1 | ORPHAN |
| 133 | NZ_CP139357.1 | A45P | pApiA45Pc | 154,609 | NI | ORPHAN | ||
| 134 | NZ_CP139358.1 | A45P | pApiA45Pb | 11,667 | RepM_Acin | cl45741 | WP_048766123.1 | ORPHAN |
| 135 | NZ_CP139359.1 | A45P | pApiA45Pa | 10,369 | RepM_Acin | cl45742 | WP_005244554.1 | ORPHAN |
Accession numbers of the plasmid DNA sequences, their names and sizes, description of the Rep proteins regarding to their protein domains, and if they belong or not (ORPHAN) to a plasmid lineage (PLP). Plasmids marked in bold letters carry antibiotic resistant genes.