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. 2024 May 31;27(7):110151. doi: 10.1016/j.isci.2024.110151
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Anti-KIF22 antibody GeneTex Cat#GTX66353; RRID:AB_2943604
Anti-Ki67 antibody Abcam Cat#ab15580; RRID:AB_443209
Anti-cleaved caspase3 antibody Cell signaling technologies Cat#9664; RRID:AB_2070042
Anti-α-tubulin antibody Fujifilm Wako Cat#017–25031; RRID:AB_2943605
Anti-Myc-tag antibody MEDICAL & BIOLOGICAL LABORATORIES CO., LTD. Cat#M192-3; RRID:AB_11160947
Anti-GAPDH, HRP conjugate MEDICAL & BIOLOGICAL LABORATORIES CO., LTD. Cat#M171-7;
RRID:AB_10699462
Anti-Mouse, HRP conjugate Jackson ImmunoResearch Laboratories Cat#115-035-062; RRID:AB_2338504
Anti-Rabbit, HRP conjugate Jackson ImmunoResearch Laboratories Cat#111-035-045; RRID:AB_2337938
Alexa Fluor 546-conjugated anti-rabbit IgG Thermo Fisher Scientific Cat#A-11035; RRID:AB_2534093
Alexa Fluor 488-conjugated anti-rabbit IgG Thermo Fisher Scientific Cat#A-32731; RRID:AB_2633280
Alexa Fluor 555-conjugated anti-mouse IgG Thermo Fisher Scientific Cat#A-32727; RRID:AB_2633276
Alexa Fluor 488-conjugated anti-mouse IgG Thermo Fisher Scientific Cat#A-32723; RRID:AB_2633275

Bacterial and virus strains

5-alpha Competent E. coli New England Biolabs Cat#C2987H

Chemicals, peptides, and recombinant proteins

Alcian blue 8GX Merck Cat#A5268-10G
Alizarin Red S Fujifilm wako Cat#011-01192
Methyl-methacrylate and 2-hydroxyethyl methacrylate mixture Fujifilm wako Cat#086-04385
Dulbecco’s Modified Eagle Medium (DMEM)/Ham’s F12 Fujifilm Wako Cat#048-29785
Streptomycin Fujifilm Wako Cat#168-23191
Insulin-Transferrin-Selenium (ITS) solution Thermo Fisher Scientific Cat#41400045
DMEM Fujifilm Wako Cat#043-30085
Collagenase Fujifilm Wako Cat#034-22363
TRIzol™ Reagent Thermo Fisher Scientific Cat#15596026
Power Up SYBR™ Green Master Mix Thermo Fisher Scientific Cat#A25742
ProLong™ Glass Antifade Mountant Thermo Fisher Scientific Cat#P36984
4′,6-diamidino-2-phenylindole, dihydrochloride (DAPI) Dojindo Cat#D212
Protease Inhibitor Cocktail SetⅠ Fujifilm Wako Cat#165-26021
PhosSTOP™ Merck Cat#4906845001
Immobilon ECL Ultra Western HRP Substrate Merck Cat#WBULS0100
Nocodazol Selleck Biotech Cat#S2775

Critical commercial assays

PrimeSTAR Max Takara Bio Cat#R045A
PrimeSTAR Mutagenesis Basal Kit Takara Bio Cat#R046A
Fast Gene™ RNA Basic Kit Nippon Gene Cat#FG-80050
High-Capacity cDNA Reverse Transcription Kit Thermo Fisher Scientific Cat#4368814
Cell Counting Kit-8 (CCK8) Dojindo Cat#CK04
MEBSTAIN Apoptosis TUNEL Kit Direct MBL Cat#8445
Dual-Glo Luciferase Assay System Promega Cat#E2920
Nano-Glo Dual-Luciferase Reporter Assay System Promega Cat#N1610

Experimental models: Cell lines

ATDC5 cells Riken Bio Resource Center Cell Bank Cat#RCB0565; RRID:CVCL_3894
HEK293 cells Riken Bio Resource Center Cell Bank Cat#RCB1637; RRID:CVCL_0045

Experimental models: Organisms/strains

C57BL/6N CLEA Japan N/A
Kif22ΔC/C57BL/6N This paper N/A

Oligonucleotides

Primer: Kif22 Forward: GGCCGCTGTGTAAGCAAAG This paper N/A
Primer: Kif22 Reverse: TCCTTCGCTTCTGTCTCTCCA This paper N/A
Primer: Col2a1 Forward: GCTGGTGAAGAAGGCAAACGAG Nakatomi et al.37 https://doi.org/10.1016/j.bone.2019.01.002
Primer: Col2a1 Reverse: CCATCTTGACCTGGGAATCCAC Nakatomi et al.37 https://doi.org/10.1016/j.bone.2019.01.002
Primer: Acan Forward: CAGCTGCCCTTCACATGTAAA Nakatomi et al.37 https://doi.org/10.1016/j.bone.2019.01.002
Primer: Acan Reverse: TGGACAAAGCCCTCAGTACACT Nakatomi et al.37 https://doi.org/10.1016/j.bone.2019.01.002
Primer: Tbp Forward: GAAGCTGCGGTACAATTCCAG Goto et al.38 https://doi.org/10.1177/00220345221075966
Primer: Tbp Reverse: CCCCTTGTACCCTTCACCAAT Goto et al.38 https://doi.org/10.1177/00220345221075966
Primer: qPCR Kif22 wt check Forward: aacctggagtgattcctcggg This paper N/A
Primer: qPCR Kif22 ΔC check Forward: aacctggagtgattcctcAgC This paper N/A
Primer: qPCR Kif22 check Reverse: atgcaggatccaagaggtctaatac This paper N/A

Recombinant DNA

pBAsi-mU6 vector Takara Bio Cat#3222
Cosmid vector pAxcwit2 Takara Bio Cat#6174
pcDNA3.1 Thermo Fisher Scientific Cat#V79020
Cosmid vector pAxEFwtit2 Takara Bio Cat#6174
pTagRFP-tubulin Evrogen Cat#FP145
pGL4.74[hRluc TK] Promega Cat#E6921
pBiT1.1-C [TK/LgBiT] Vector Promega Cat#N196A
pBiT2.1-C [TK/SmBiT] Vector Promega Cat#N197A
pGL4.53[luc2/PGK] Vector Promega Cat#E501A
Col2a1-luc Hata et al.39,40

Software and algorithms

ImageJ Schneider et al.41 https://imagej.nih.gov/ij/