REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Alpha Tubulin Polyclonal antibody | Proteintech | Cat No. 11224-1-AP; RRID: AB_2210206 |
Anti-L-Lactyl-Histone H3 (Lys9) Rabbit mAb | PTMBIO | Cat: PTM-1419RM; RRID: AB_3076695 |
Anti-L-Lactyl-Histone H3 (Lys18) Rabbit mAb | PTMBIO | Cat: PTM-1406RM; RRID: AB_2909438 |
Anti-L-Lactyl-Histone H4 (Lys5) Rabbit pAb | PTMBIO | Cat: PTM-1407; RRID: AB_3096309 |
Anti-L-Lactyl-Histone H4 (Lys8) Rabbit mAb | PTMBIO | Cat: PTM-1415RM; RRID: AB_3101829 |
Anti-H4K12la Rabbit pAb | PTMBIO | Cat: PTM-1411; RRID: AB_2941896 |
Anti-L-Lactyl-Histone H4 (Lys16) Rabbit mAb | PTMBIO | Cat: PTM-1417RM; RRID: AB_3101830 |
Anti-Histone H3.3 Rabbit mAb | PTMBIO | Cat: PTM-7294; RRID: AB_3101831 |
Anti-L-Lactyl Lysine Rabbit pAb | PTMBIO | Cat: PTM-1401; RRID: AB_2868521 |
LAMC2 Polyclonal antibody | Proteintech | Cat No. 19698-1-AP; RRID: AB_10644139 |
VEGFA Polyclonal antibody | Proteintech | Cat No. 19003-1-AP; RRID: AB_2212657 |
DYKDDDDK tag Monoclonal antibody | Proteintech | Cat No. 66008-4-Ig; RRID: AB_2918475 |
HIF-1 alpha Polyclonal antibody | Proteintech | Cat No. 20960-1-AP; RRID: AB_10732601 |
LDHA Rabbit pAb | abclonal | Cat: A1146; RRID: AB_2758572 |
Ki67 Rabbit pAb | abclonal | Cat: A11390; RRID: AB_2758539 |
AKT Monoclonal antibody | Proteintech | Cat No. 60203-2-Ig; RRID: AB_10912803 |
Phospho-AKT (Ser473) Recombinant antibody | Proteintech | Cat No. 80455-1-RR; RRID: AB_2918892 |
Anti-L-lactyllysine antibody conjugated agarose beads | PTMBIO | Cat: PTM-1404; RRID: AB_3101832 |
Bacterial and virus strains | ||
DH5α Competent Cells | Sangon Biotech | Cat: B528413-0100 |
Chemicals, peptides, and recombinant proteins | ||
Trypsin | Beijin life proteomic | Cat: 9002-07-7 |
Deacetylase Inhibitor Cocktail 100 × | Beyotime | Cat: P1113 |
Trizol | Invitrogen | Cat: 15596026 |
2 - NBDG | MedChemExpress | Cat: 186689-07-6 |
MNase | Merck | Cat: 9013-53-0 |
2 × RealStar Fast SYBR qPCR Mix | GenStar | Cat: A301-10 |
DMEM for SILAC | Thermo Scientific™ | Cat: A33822 |
Fetal Bovine Serum Dialyzed | ThermoFisher | Cat: 30067334 |
L-Argnie- HCl | ThermoFisher | Cat: 88427 |
L-13C6-lysine-2 × HCl | ThermoFisher | Cat: 88431 |
L-lysine-2 × HCl | ThermoFisher | Cat: 88429 |
Fetal Bovine Serum | VivaCell | Cat: C2910-0500 |
Roswell Park Memorial Institute (RPMI) 1640 | ThermoFisher | Cat: C3001-0500 |
Penicillin-Streptomycin Solution, 100× | Beyotime | Cat: C0222 |
Defined Keratinocyte-SFM a serum-free medium | Gibco | Cat: MEPI500CA |
EpiLife | Gibco | Cat: 10744019 |
RIPA Lysis Buffer | Beyotime | Cat: P0013B |
PMSF | Beyotime | Cat: ST505 |
C18 ZipTips | Millipore Corp | Cat: ZTC18M096 |
Critical commercial assays | ||
Pierce™ BCA Protein Assay Kit | Thermo Scientific™ | Cat: 23227 |
CheKine™ Micro Lactate Assay Kit | Abbkine | Cat: KTB1100 |
DAB Kit | Solarbio | Cat: DA1015 |
Anti-L-lactyllysine antibody conjugated agarose beads | PTM | PTM-1014K |
Deposited data | ||
MS/MS analysis for protein quantification | This paper | ProteomeXchange Consortium: PXD048995. |
MNase ChIP-seq and RNA-seq data | This paper | Gene Expression Omnibus (GEO): GSE255352 |
Experimental models: Cell lines | ||
KYSE 30 | Pricella Life | Cat: CL-0577 |
KYSE 140 | FengHuiShengWu | Cat: CL0437 |
KYSE 150 | Pricella Life | Cat: CL-0638 |
KYSE 450 | FengHuiShengWu | Cat: CL0606 |
NE3 | BLUEFBIO™ | Cat: BFN607200102 |
HEK-293T | ATCC | Cat: CRL-11268 |
Experimental models: Organisms/strains | ||
BALB/c nude | Beijing Vital River Laboratory Animal Technology Co., Ltd | https://buy.vitalriver.com/commodity/detail?productId=402883af7e23dcd2017e23dd211e0adb |
Oligonucleotides | ||
LAMC2 ChIP3-For 5’ GTGGAGAGGACCCTGTTGTG 3’ |
tsingke | HPLC-purified |
LAMC2 ChIP3-Rev 5’ CCAGGGCAGATTCACAGAGG 3’ |
tsingke | HPLC-purified |
LAMC2 qPCR-For 5’ GACAAACTGGTAATGGATTCCGC 3’ |
tsingke | HPLC-purified |
LAMC2 qPCR-Rev 5’ TTCTCTGTGCCGGTAAAAGCC 3’ |
tsingke | HPLC-purified |
GAPDH-qPCR-For 5’ GCACCGTCAAGGCTGAGAAC 3’ |
tsingke | HPLC-purified |
GAPDH-qPCR-Rev 5' TGGTGAAGACGCCAGTGGA 3' |
tsingke | HPLC-purified |
LAMC2-shRNA1 5’ GCCCTGCAATTGTAACTCCAA 3’ |
tsingke | HPLC-purified |
LAMC2-shRNA2 5’ GCTCACCAAGACTTACACATT 3’ |
tsingke | HPLC-purified |
5’ AGGGCAGAATCATCACGAAGT 3’ VEGFA-qPCR-For |
tsingke | HPLC-purified |
5’ AGGGTCTCGATTGGATGGCA 3’ VEGFA-qPCR-Rev |
tsingke | HPLC-purified |
Recombinant DNA | ||
Plasmid: plvx-puro | This paper | N/A |
Plasmid: Plko.1-puro | This paper | N/A |
Software and algorithms | ||
R | https://www.r-project.org | N/A |
DESeq2 | https://github.com/mikelove | N/A |
GraphPad Prism 8 | www.graphpad.com | N/A |
MaxQuant (v.1.5.5.1) | https://www.maxquant.org/ | N/A |