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. 2024 Jun 5;27(7):110188. doi: 10.1016/j.isci.2024.110188
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Alpha Tubulin Polyclonal antibody Proteintech Cat No. 11224-1-AP; RRID: AB_2210206
Anti-L-Lactyl-Histone H3 (Lys9) Rabbit mAb PTMBIO Cat: PTM-1419RM; RRID: AB_3076695
Anti-L-Lactyl-Histone H3 (Lys18) Rabbit mAb PTMBIO Cat: PTM-1406RM; RRID: AB_2909438
Anti-L-Lactyl-Histone H4 (Lys5) Rabbit pAb PTMBIO Cat: PTM-1407; RRID: AB_3096309
Anti-L-Lactyl-Histone H4 (Lys8) Rabbit mAb PTMBIO Cat: PTM-1415RM; RRID: AB_3101829
Anti-H4K12la Rabbit pAb PTMBIO Cat: PTM-1411; RRID: AB_2941896
Anti-L-Lactyl-Histone H4 (Lys16) Rabbit mAb PTMBIO Cat: PTM-1417RM; RRID: AB_3101830
Anti-Histone H3.3 Rabbit mAb PTMBIO Cat: PTM-7294; RRID: AB_3101831
Anti-L-Lactyl Lysine Rabbit pAb PTMBIO Cat: PTM-1401; RRID: AB_2868521
LAMC2 Polyclonal antibody Proteintech Cat No. 19698-1-AP; RRID: AB_10644139
VEGFA Polyclonal antibody Proteintech Cat No. 19003-1-AP; RRID: AB_2212657
DYKDDDDK tag Monoclonal antibody Proteintech Cat No. 66008-4-Ig; RRID: AB_2918475
HIF-1 alpha Polyclonal antibody Proteintech Cat No. 20960-1-AP; RRID: AB_10732601
LDHA Rabbit pAb abclonal Cat: A1146; RRID: AB_2758572
Ki67 Rabbit pAb abclonal Cat: A11390; RRID: AB_2758539
AKT Monoclonal antibody Proteintech Cat No. 60203-2-Ig; RRID: AB_10912803
Phospho-AKT (Ser473) Recombinant antibody Proteintech Cat No. 80455-1-RR; RRID: AB_2918892
Anti-L-lactyllysine antibody conjugated agarose beads PTMBIO Cat: PTM-1404; RRID: AB_3101832

Bacterial and virus strains

DH5α Competent Cells Sangon Biotech Cat: B528413-0100

Chemicals, peptides, and recombinant proteins

Trypsin Beijin life proteomic Cat: 9002-07-7
Deacetylase Inhibitor Cocktail 100 × Beyotime Cat: P1113
Trizol Invitrogen Cat: 15596026
2 - NBDG MedChemExpress Cat: 186689-07-6
MNase Merck Cat: 9013-53-0
2 × RealStar Fast SYBR qPCR Mix GenStar Cat: A301-10
DMEM for SILAC Thermo Scientific™ Cat: A33822
Fetal Bovine Serum Dialyzed ThermoFisher Cat: 30067334
L-Argnie- HCl ThermoFisher Cat: 88427
L-13C6-lysine-2 × HCl ThermoFisher Cat: 88431
L-lysine-2 × HCl ThermoFisher Cat: 88429
Fetal Bovine Serum VivaCell Cat: C2910-0500
Roswell Park Memorial Institute (RPMI) 1640 ThermoFisher Cat: C3001-0500
Penicillin-Streptomycin Solution, 100× Beyotime Cat: C0222
Defined Keratinocyte-SFM a serum-free medium Gibco Cat: MEPI500CA
EpiLife Gibco Cat: 10744019
RIPA Lysis Buffer Beyotime Cat: P0013B
PMSF Beyotime Cat: ST505
C18 ZipTips Millipore Corp Cat: ZTC18M096

Critical commercial assays

Pierce™ BCA Protein Assay Kit Thermo Scientific™ Cat: 23227
CheKine™ Micro Lactate Assay Kit Abbkine Cat: KTB1100
DAB Kit Solarbio Cat: DA1015
Anti-L-lactyllysine antibody conjugated agarose beads PTM PTM-1014K

Deposited data

MS/MS analysis for protein quantification This paper ProteomeXchange Consortium:
PXD048995.
MNase ChIP-seq and RNA-seq data This paper Gene Expression Omnibus (GEO): GSE255352

Experimental models: Cell lines

KYSE 30 Pricella Life Cat: CL-0577
KYSE 140 FengHuiShengWu Cat: CL0437
KYSE 150 Pricella Life Cat: CL-0638
KYSE 450 FengHuiShengWu Cat: CL0606
NE3 BLUEFBIO™ Cat: BFN607200102
HEK-293T ATCC Cat: CRL-11268

Experimental models: Organisms/strains

BALB/c nude Beijing Vital River Laboratory Animal Technology Co., Ltd https://buy.vitalriver.com/commodity/detail?productId=402883af7e23dcd2017e23dd211e0adb

Oligonucleotides

LAMC2 ChIP3-For
5’ GTGGAGAGGACCCTGTTGTG 3’
tsingke HPLC-purified
LAMC2 ChIP3-Rev
5’ CCAGGGCAGATTCACAGAGG 3’
tsingke HPLC-purified
LAMC2 qPCR-For
5’ GACAAACTGGTAATGGATTCCGC 3’
tsingke HPLC-purified
LAMC2 qPCR-Rev
5’ TTCTCTGTGCCGGTAAAAGCC 3’
tsingke HPLC-purified
GAPDH-qPCR-For
5’ GCACCGTCAAGGCTGAGAAC 3’
tsingke HPLC-purified
GAPDH-qPCR-Rev
5' TGGTGAAGACGCCAGTGGA 3'
tsingke HPLC-purified
LAMC2-shRNA1
5’ GCCCTGCAATTGTAACTCCAA 3’
tsingke HPLC-purified
LAMC2-shRNA2
5’ GCTCACCAAGACTTACACATT 3’
tsingke HPLC-purified
5’ AGGGCAGAATCATCACGAAGT 3’
VEGFA-qPCR-For
tsingke HPLC-purified
5’ AGGGTCTCGATTGGATGGCA 3’
VEGFA-qPCR-Rev
tsingke HPLC-purified

Recombinant DNA

Plasmid: plvx-puro This paper N/A
Plasmid: Plko.1-puro This paper N/A

Software and algorithms

R https://www.r-project.org N/A
DESeq2 https://github.com/mikelove N/A
GraphPad Prism 8 www.graphpad.com N/A
MaxQuant (v.1.5.5.1) https://www.maxquant.org/ N/A