TABLE 5.
CO of ESBL-Ec isolates from different sources and study sites
CO | Sample ID | Location | Source | ST | Serotype |
---|---|---|---|---|---|
Between locations (household [HH] and wet market [WM]) | |||||
1 | TR-011-DRW | HH | River water | 405 | O102:H6 |
DL-062-SS1 | WM | Solid waste | 405 | O102:H6 | |
DL-165-SS1 | HH | Solid waste | 405 | O102:H6 | |
DL-064-WW | WM | Wastewater | 405 | O102:H6 | |
2 | DL-187-SS1 | WM | Solid waste | 405 | O102:H6 |
DL-183-SS1 | WM | Solid waste | 405 | O102:H6 | |
TR-019-FPW | HH | Fresh pond water | 405 | O102:H6 | |
TR-104-DRW | HH | River water | 405 | O102:H6 | |
3 | DL-083-SS2 | WM | Solid waste | 8346 | O64:H10 |
TR-110-DRW | HH | River water | 8346 | O64:H10 | |
4 | TR-21-DRW | HH | River water | 6683 | O18:H49 |
DL-67–01-FH | WM | Human high exp | 6683 | O18:H49 | |
Between locations (household [HH] and rural farm [RF]) | |||||
5 | TF-122-DRW | RF | River water | 38 | O60:H30 |
TR-108-DRW | HH | River water | 38 | O60:H30 | |
TR-119-DRW | HH | River water | 38 | O60:H30 | |
6 | TR-109-AM | HH | Animal manure | 155 | O-:H25 |
TR-109–01-FH | HH | Human high exp | 155 | O-:H25 | |
TF-125-DPW | PF | Pond water | 155 | O-:H25 | |
TF-125-WW | PF | Wastewater | 155 | O-:H25 | |
TR-05-FPW | HH | Fresh pond water | 155 | O-:H25 | |
7 | TF-125–01-FH | PF | Human high exp | 131 | O25:H4 |
TR-05-DRW | HH | River water | 131 | O25:H4 | |
SRR11496578 | Global | Clinical | 131 | O25:H4 | |
Same location (different wet markets [WM]) | |||||
8 | DL-182-FP1 | WM | Poultry pens | 405 | O102:H6 |
DL-182-CL | WM | Chicken cloacae | 405 | O102:H6 | |
DL-167-WW2 | WM | Wastewater | 405 | O102:H6 | |
9 | DL-182–02-FH | WM | Human high exp | 68 | O99:H6 |
DL-185-SS2 | WM | Solid waste | 68 | O99:H6 | |
10 | DL-180–02-FL | WM | Human low exp | 448 | O1:H19 |
DL-181-WW | WM | Wastewater | 448 | O1:H19 | |
DL-187-WW | WM | Wastewater | 448 | O1:H19 | |
11 | DL-185-WW | WM | Wastewater | 4450 | O53:H18 |
DL-169-WW | WM | Wastewater | 4450 | O53:H18 | |
Same location (different households [HH]) | |||||
12 | TR-113-DRW | HH | River water | 101 | O160:H31 |
TR-111-DRW | HH | River water | 101 | O160:H31 | |
TR-101-DRW | HH | River water | 101 | O160:H31 | |
TR-102-DRW | HH | River water | 101 | O160:H31 | |
Same location (same rural farm [RF]) | |||||
13 | TF-130-CL | RF | Chicken cloacae | 155 | O153:H9 |
TF-130-DRW | RF | River water | 155 | O153:H9 | |
Same location (same wet market [WM]) | |||||
14 | DL-069-SS | WM | Solid waste | 361 | O9:H30 |
DL-069-WW | WM | Wastewater | 361 | O9:H30 | |
Same location (same household [HH]) | |||||
15 | TR-10-FP | HH | Poultry pens | 1727 | O-:H7 |
TR-10-AM | HH | Animal manure | 1727 | O-:H7 | |
TR-10-FPW | HH | Pond water | 1727 | O-:H7 | |
16 | TR-10-WW | HH | Wastewater | 3489 | O147:H40 |
TR-10-DRW | HH | River water | 3489 | O147:H40 |