Table 2. Mapping results of RNA-seq clean reads from nine fiber samples.
| Samples | 20 DPA | 25 DPA | 30 DPA | ||||
|---|---|---|---|---|---|---|---|
| Map to genome | Number | Percentage | Number | Percentage | Number | Percentage | |
| HL | Total reads | 12.1 M | 100% | 12.3 M | 100% | 11.6 M | 100% |
| Total base pairs | 590.9 Mbp | 100% | 600.8 Mbp | 100% | 569.0 Mbp | 100% | |
| Total mapped reads | 9.3 M | 77% | 9.3 M | 76% | 8.7 M | 75% | |
| Perfect match | 5.2 M | 43% | 5.1 M | 41.86% | 4.8 M | 40.99% | |
| <=2 bp mismatch | 4.1 M | 34% | 4.2 M | 34% | 4.0 M | 34% | |
| Unique match | 8.1 M | 67% | 8.4 M | 68% | 7.7 M | 65.96% | |
| Multi-position match | 1.2 M | 10% | 0.97 M | 7.91% | 1.1 M | 9% | |
| Total unmapped reads | 2.8 M | 23% | 2.9 M | 23.82% | 2.9 M | 24.82% | |
| L | Total reads | 12.1 M | 100% | 11.7 M | 100% | 11.9 M | 100% |
| Total base pairs | 593.0 Mbp | 100% | 573.5 Mbp | 100% | 583.3 Mbp | 100% | |
| Total mapped reads | 9.2 M | 76% | 8.9 M | 76% | 8.5 M | 72% | |
| Perfect match | 5.0 M | 41% | 4.9 M | 42% | 4.9 M | 41% | |
| <=2 bp mismatch | 4.1 M | 34% | 4.0 M | 34% | 3.6 M | 30% | |
| Unique match | 8.5 M | 70% | 8.1 M | 69% | 6.3 M | 53% | |
| Multi-position match | 0.68 M | 6% | 0.79 M | 7% | 2.2 M | 19% | |
| Total unmapped reads | 2.9 M | 24% | 2.8 M | 24% | 3.4 M | 28% | |
| S | Total reads | 12.6 M | 100% | 11.7 M | 100% | 12.2 M | 100% |
| Total base pairs | 616.5 Mbp | 100% | 573.5 Mbp | 100% | 598.9 Mbp | 100% | |
| Total mapped reads | 9.4 M | 75% | 8.9 M | 76% | 9.1 M | 75% | |
| Perfect match | 5.2 M | 41% | 4.9 M | 42% | 5.0 M | 41% | |
| <=2bp mismatch | 4.2 M | 34% | 4.0 M | 34% | 4.2 M | 34% | |
| Unique match | 8.7 M | 69% | 8.2 M | 70% | 8.3 M | 68% | |
| Multi-position match | 0.69 M | 5% | 0.72 M | 6% | 0.80 M | 7% | |
| Total unmapped reads | 3.2 M | 25% | 2.8 M | 24% | 3.1 M | 25% |