TABLE 4.
HPV candidate | Sourceb | Size of fragment analyzedc (bp) | Closest related HPV type or candidate | Nucleotide sequence homology (%) |
---|---|---|---|---|
FA14 | RTR | 434 | HPV 8 | 72 |
FA15 | RTR | 443 | HPV FA4 | 68 |
FA16.1d | RTR | 437 | HPV 23 | 81 |
FA16.2d | RTR | 437 | HPV 23 | 81 |
FA17 | RTR | 437 | HPV RTRX7 | 78 |
FA18 | RTR | 434 | HPV 8 | 71 |
FA19 | RTR | 215 | PCPV 1 | 61 |
FA20 | D | 431 | HPV FA11 | 72 |
FA21 | HC | 431 | HPV 4 | 67 |
FA22 | D | 440 | HPV FA7 | 81 |
FA23.1d | HC, RTR | 434 | HPV 8 | 71 |
FA23.2d | D | 434 | HPV 8 | 71 |
FA24 | HC, D | 440 | HPV FA4 | 70 |
FA25 | D | 434 | HPV 5 | 72 |
FA26 | D | 434 | HPV 8 | 72 |
FA27 | D | 434 | HPV 50 | 82 |
FA28 | RTR | 437 | HPV FA13 | 68 |
FA29 | RTR | 440 | HPV FA2.1 | 67 |
FA30 | RTR | 440 | HPV FA13 | 76 |
FA31 | RTR | 215 | HPV 48 | 63 |
FA32 | RTR | 437 | HPV FA11 | 65 |
FA33 | RTR | 215 | HPV 48 | 59 |
FA34 | RTR | 440 | HPV 50 | 64 |
FA35 | RTR | 440 | HPV FA13 | 64 |
FA36 | HC | 218 | HPV 5 NAf3 | 77 |
FA37 | Floor | 437 | HPV 5 | 77 |
FA38 | HC | 221 | HPV FA2.3 | 62 |
FA39 | HC | 440 | HPV FA7 | 82 |
FA40 | HC | 437 | HPV 38 | 74 |
FA41 | RTR | 440 | HPV 4 | 70 |
FA42 | HC | 437 | HPV FA7 | 80 |
FA43 | HC | 446 | HPV FA6 | 81 |
HPV candidates are presented together with the previously characterized HPV types to which they show the closest DNA sequence homology.
RTR, renal transplant recipient; D, dialysis patient; HC, healthy control.
Primer sequences not included.
FA16.1 and FA16.2, as well as FA23.1 and FA23.2, represent subtypes.