Table 2.

Summary of tested variants and phenotypes from real data

Query variant set	N QV	N QT	N QV-QT pairs*	N QV-QT detected as Hc	N (%) unique variants detected as Hc	pc/pa
FinnGen (with $r_g$)	75	1582	130697	184	30 (40%)	95.6
FinnGen (no $r_g$)	136	2275	193706	328	43 (31.62%)	47.5
pQTL (no $r_g$)	505	2275	954616	29	9 (1.78%)	1.28
PTV all (no $r_g$)	3586	2275	4359271	26	11 (0.31%)	1.02
PTV gnomAD (no $r_g$)	366	2275	292787	7	2 (0.54%)	2.59
PTV stop gained (no $r_g$)	911	2275	837060	15	6 (0.66%)	1.39

QV query variant, QT query trait, N QV-QT number of trait-variant associations. The number of QT were lower for the FinnGen/UKBB dataset for the ʻwith r_gʼ case as only traits having data with the primary traits available were retained (Methods).