Skip to main content
. 2024 Jul 12;15:5867. doi: 10.1038/s41467-024-50275-3

Table 2.

Proteins predicted to bind purines and analyzed in this study

Name Ref. Seq ID Receptor typea Motif variantb Species/strain Phylogenetic category (Phylum) Pathogenicity/characteristicsc
R1 WP_219614703 CR YRWFN Aeromonas salmonicida Pseudomonadota Fish pathogen, mainly salmon. Important economic losses
R2 WP_107944080 CR YKWYN Campylobacter concisus Campylobacterota Human pathogen, causes inflammatory bowel disease
R3 WP_124259872 CR YRWFD Burkholderia vietnamiensis Pseudomonadota Human pathogen, causes lung infections. High mortality rate
R4 WP_199478134 CR FRFYN Marinomonas spartinae Pseudomonadota Halophyte plant isolate, can promote plant growth
R5 WP_131005693 GGDEF/EAL YRWFN Clostridioides difficile Bacillota Human pathogen, at times fatal. Disrupts gut microbiota
R6 WP_185834821 GGDEF YKWFN Vibrio cholerae Pseudomonadota Human pathogen, causes life-threatening diarrheal disease
R7 WP_038903150 GGDEF YHWFN Dickeya zeae Pseudomonadota Plant pathogen, in particular maize and rice
R8 WP_227113344 GGDEF YRWFN Eggerthella sinensis Actinomycetota Human pathogen, causes life-threatening bacteremia
R9 WP_198537540 GGDEF YKWFN Vulcanococcus limneticus Cyanobacteriota N2-fixing bacterium, isolated from freshwater
R10 WP_110129388 HK YKWFN Coraliomargarita sinensis Verrucomicrobiota Isolated from a marine saltern
R11 WP_162024566 HK YKWFN Lentimonas sp. CC4 Verrucomicrobiota Efficient degrader of fucoidan, a major algae product
R12 WP_220621668 HK YKWFN Ruficoccus sp. ZRK36 Verrucomicrobiota Isolated from deep sea cold seep
R13 WP_167859577 S/T phos YKWFN Paenibacillus cymbidii Bacillota N2-fixing isolated from orchid roots
R14 WP_021170906 S/T phos YKWFN Sporomusa ovata Bacillota Anaerobic, endospore forming bacterium, isolated from leaves
R15 WP_207952809 S/T phos YRWFN Paenibacillus sp. S3N08 Bacillota Isolated from agricultural soil

The first column specifies the number given to the different receptors.

aCR chemoreceptor, GGDEF/EAL diguanylate cyclase/phosphodiesterase, HK histidine kinase, S/T phos serine/threonine phosphatase.

bLigand binding residues of the dCache_1PU motif are shown. Strands of non-conserved residues between the motif residues are implied according to the motif definition in Fig. 2D.

cThe corresponding references are provided in Supplementary Table 2.