Table 2.
Proteins predicted to bind purines and analyzed in this study
| Name | Ref. Seq ID | Receptor typea | Motif variantb | Species/strain | Phylogenetic category (Phylum) | Pathogenicity/characteristicsc |
|---|---|---|---|---|---|---|
| R1 | WP_219614703 | CR | YRWFN | Aeromonas salmonicida | Pseudomonadota | Fish pathogen, mainly salmon. Important economic losses |
| R2 | WP_107944080 | CR | YKWYN | Campylobacter concisus | Campylobacterota | Human pathogen, causes inflammatory bowel disease |
| R3 | WP_124259872 | CR | YRWFD | Burkholderia vietnamiensis | Pseudomonadota | Human pathogen, causes lung infections. High mortality rate |
| R4 | WP_199478134 | CR | FRFYN | Marinomonas spartinae | Pseudomonadota | Halophyte plant isolate, can promote plant growth |
| R5 | WP_131005693 | GGDEF/EAL | YRWFN | Clostridioides difficile | Bacillota | Human pathogen, at times fatal. Disrupts gut microbiota |
| R6 | WP_185834821 | GGDEF | YKWFN | Vibrio cholerae | Pseudomonadota | Human pathogen, causes life-threatening diarrheal disease |
| R7 | WP_038903150 | GGDEF | YHWFN | Dickeya zeae | Pseudomonadota | Plant pathogen, in particular maize and rice |
| R8 | WP_227113344 | GGDEF | YRWFN | Eggerthella sinensis | Actinomycetota | Human pathogen, causes life-threatening bacteremia |
| R9 | WP_198537540 | GGDEF | YKWFN | Vulcanococcus limneticus | Cyanobacteriota | N2-fixing bacterium, isolated from freshwater |
| R10 | WP_110129388 | HK | YKWFN | Coraliomargarita sinensis | Verrucomicrobiota | Isolated from a marine saltern |
| R11 | WP_162024566 | HK | YKWFN | Lentimonas sp. CC4 | Verrucomicrobiota | Efficient degrader of fucoidan, a major algae product |
| R12 | WP_220621668 | HK | YKWFN | Ruficoccus sp. ZRK36 | Verrucomicrobiota | Isolated from deep sea cold seep |
| R13 | WP_167859577 | S/T phos | YKWFN | Paenibacillus cymbidii | Bacillota | N2-fixing isolated from orchid roots |
| R14 | WP_021170906 | S/T phos | YKWFN | Sporomusa ovata | Bacillota | Anaerobic, endospore forming bacterium, isolated from leaves |
| R15 | WP_207952809 | S/T phos | YRWFN | Paenibacillus sp. S3N08 | Bacillota | Isolated from agricultural soil |
The first column specifies the number given to the different receptors.
aCR chemoreceptor, GGDEF/EAL diguanylate cyclase/phosphodiesterase, HK histidine kinase, S/T phos serine/threonine phosphatase.
bLigand binding residues of the dCache_1PU motif are shown. Strands of non-conserved residues between the motif residues are implied according to the motif definition in Fig. 2D.
cThe corresponding references are provided in Supplementary Table 2.