Skip to main content
. 2024 Jul 1;12:1404218. doi: 10.3389/fbioe.2024.1404218

TABLE 1.

Primers used for TnSeq.

Name Sequence (5'→3′) Sample barcode Description Source
P5-IR2-1 AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTNNNNAGgatcagTCAGGGTTGAGATGTGTATAAGAGACAG DDW 1 Semi-arbitrary PCR method Mandal et al. (2021)
P5-IR2-2 AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTNNNNAGcttgtaTCAGGGTTGAGATGTGTATAAGAGACAG L-Arginine 1 Semi-arbitrary PCR method Mandal et al. (2021)
P5-IR2-3 AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTNNNNAGataacgTCAGGGTTGAGATGTGTATAAGAGACAG DDW 2 Semi-arbitrary PCR method Mandal et al. (2021)
P5-IR2-4 AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTNNNNAGggctagTCAGGGTTGAGATGTGTATAAGAGACAG L-Arginine 2 Semi-arbitrary PCR method Mandal et al. (2021)
P5-IR2-5 AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTNNNNAGttcggcTCAGGGTTGAGATGTGTATAAGAGACAG T0 1 Semi-arbitrary PCR method Mandal et al. (2021)
P5-IR2-6 AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCTNNNNAGcagatcTCAGGGTTGAGATGTGTATAAGAGACAG T0 2 Semi-arbitrary PCR method Mandal et al. (2021)
Ez tn5 <KAN2> FP ACC​TAC​AAC​AAA​GCT​CTC​ATC​AAC​C Semi-arbitrary PCR method EZ-Tn5™ <KAN-2>Tnp Transposome™ Kit
Rnd1-PE-arb1 CTCGGCATTCCTGCTGAACCGCTCTTCCGATCTNNNNNNNNNNTGCTG Semi-arbitrary PCR method Custom primer based on (Christen et al., 2011) primer
round2-PE-P7 CAA​GCA​GAA​GAC​GGC​ATA​CGA​GAT​CGG​TCT​CGG​CAT​TCC​TGC​TGA​ACC​GCT​CTT​CCG​ATC​T Semi-arbitrary PCR method Christen et al. (2011)