Skip to main content
. 2024 Jul 1;12:1404218. doi: 10.3389/fbioe.2024.1404218

TABLE 2.

Transposon mutants’ abundance in egg white.

Egg white with DDW control vs. input Egg white with arginine vs. input
Locus tag Gene name Function Log Fold Change P-value Q-value Log Fold Change P-value Q-value
Iron restriction response
STM14_0231 fhuB iron-hydroxamate transporter permease subunit −6.65 0.00216 0.02588 −5.50 0.00485 0.04709
STM14_0228 fhuA ferrichrome outer membrane transporter −5.12 0.01320 0.10880 −6.51 0.00363 0.03784
STM14_3825 exbB biopolymer transport protein ExbB - iron transport −5.82 0.00746 0.06534 −9.01 0.00121 0.01780
STM14_0894 STM14_0894 iron ABC transporter permease −6.96 0.00071 0.01585 −6.73 0.00108 0.01780
STM14_3117 nifU scaffold protein for iron-sulfur cluster assembly −7.93 0.00060 0.01585 −7.70 0.00049 0.01780
Biotin metabolism
STM14_0920 bioB biotin synthetase −7.02 0.00065 0.01585 −6.80 0.00103 0.01780
STM14_0922 bioC biotin biosynthesis protein BioC −9.15 0.00108 0.01627 −8.93 0.00121 0.01780
Metabolism and transport of amino acids, purine and other nutirents
STM14_0133 leuB 3-isopropylmalate dehydrogenase - Valine, leucine and isoleucine biosynthesis −7.26 0.00068 0.01585 −7.04 0.00095 0.01780
STM14_5358 STM14_5358 ornithine carbamoyltransferase - Arginine biosynthesis −9.84 0.00048 0.01585 −3.70 0.04635 0.28689
STM14_0077 carA carbamoyl phosphate synthase small subunit - Pyrimidine metabolism −6.94 0.00075 0.01585 −6.72 0.00103 0.01780
STM14_3133 glyA serine hydroxymethyltransferase - Glycine, serine and threonine metabolism −7.48 0.00043 0.01585 −7.25 0.00049 0.01780
STM14_3931 garL alpha-dehydro-beta-deoxy-D-glucarate aldolase - Ascorbate and aldarate metabolism −8.61 0.00102 0.01627 −4.90 0.00912 0.08004
STM14_3019 eutG ethanolamine utilization protein - Glycolysis/Gluconeogenesis −5.27 0.00321 0.03284 −4.14 0.01051 0.08951
STM14_4543 STM14_4543 Pentose phosphate pathway - glycolysis 5.97 0.00129 0.01736 4.58 0.01740 0.13379
STM14_0510 phnW 2-aminoethylphosphonate--pyruvate transaminase −7.72 0.00054 0.01585 −7.50 0.00045 0.01780
STM14_2683 STM14_2683 putative glutathione S-transferase - Tyrosine metabolism −5.70 0.00188 0.02355 −7.58 0.00051 0.01780
STM14_2875 STM14_2875 5'-deoxynucleotidase - Purine metabolism −5.33 0.00197 0.02439 −4.12 0.00459 0.04503
STM14_3065 purN phosphoribosylglycinamide formyltransferase - Purine metabolism −7.67 0.00042 0.01585 −3.27 0.03169 0.21774
STM14_3067 ppx exopolyphosphatase - Purine metabolism −3.58 0.01769 0.13909 −7.17 0.00061 0.01780
STM14_3098 ndk nucleoside diphosphate kinase - Purine metabolism −3.30 0.02444 0.17845 −7.24 0.00080 0.01780
STM14_5248 purA adenylosuccinate synthetase - Purine metabolism −9.50 0.00086 0.01627 −9.28 0.00092 0.01780
STM14_1726 ydhB regulates a gene involved in the purine transport process - Purine metabolism −7.94 0.00094 0.01627 −7.70 0.00077 0.01780
STM14_2106 oppF oligopeptide transport protein −6.64 0.00305 0.03249 −6.19 0.00369 0.03830
STM14_1100 focA formate transporter −7.89 0.00064 0.01585 −7.67 0.00051 0.01780
STM14_1781 ydgI putative arginine:ornithine antiporter −8.88 0.00113 0.01666 −6.34 0.00374 0.03858
STM14_3252 kgtP alpha-ketoglutarate transporter −7.99 0.00080 0.01585 −3.35 0.04547 0.28272
STM14_4792 trkH potassium transporter −8.06 0.00090 0.01627 −4.09 0.01640 0.12740
STM14_2694 yeiA dihydropyrimidine dehydrogenase - Pyrimidine metabolism −3.05 0.04936 0.30628 −5.35 0.00259 0.02896

The red color in the table indicates statistical significance in Q-value and/or p-value <0.05.