TABLE 2.
Egg white with DDW control vs. input | Egg white with arginine vs. input | |||||||
---|---|---|---|---|---|---|---|---|
Locus tag | Gene name | Function | Log Fold Change | P-value | Q-value | Log Fold Change | P-value | Q-value |
Iron restriction response | ||||||||
STM14_0231 | fhuB | iron-hydroxamate transporter permease subunit | −6.65 | 0.00216 | 0.02588 | −5.50 | 0.00485 | 0.04709 |
STM14_0228 | fhuA | ferrichrome outer membrane transporter | −5.12 | 0.01320 | 0.10880 | −6.51 | 0.00363 | 0.03784 |
STM14_3825 | exbB | biopolymer transport protein ExbB - iron transport | −5.82 | 0.00746 | 0.06534 | −9.01 | 0.00121 | 0.01780 |
STM14_0894 | STM14_0894 | iron ABC transporter permease | −6.96 | 0.00071 | 0.01585 | −6.73 | 0.00108 | 0.01780 |
STM14_3117 | nifU | scaffold protein for iron-sulfur cluster assembly | −7.93 | 0.00060 | 0.01585 | −7.70 | 0.00049 | 0.01780 |
Biotin metabolism | ||||||||
STM14_0920 | bioB | biotin synthetase | −7.02 | 0.00065 | 0.01585 | −6.80 | 0.00103 | 0.01780 |
STM14_0922 | bioC | biotin biosynthesis protein BioC | −9.15 | 0.00108 | 0.01627 | −8.93 | 0.00121 | 0.01780 |
Metabolism and transport of amino acids, purine and other nutirents | ||||||||
STM14_0133 | leuB | 3-isopropylmalate dehydrogenase - Valine, leucine and isoleucine biosynthesis | −7.26 | 0.00068 | 0.01585 | −7.04 | 0.00095 | 0.01780 |
STM14_5358 | STM14_5358 | ornithine carbamoyltransferase - Arginine biosynthesis | −9.84 | 0.00048 | 0.01585 | −3.70 | 0.04635 | 0.28689 |
STM14_0077 | carA | carbamoyl phosphate synthase small subunit - Pyrimidine metabolism | −6.94 | 0.00075 | 0.01585 | −6.72 | 0.00103 | 0.01780 |
STM14_3133 | glyA | serine hydroxymethyltransferase - Glycine, serine and threonine metabolism | −7.48 | 0.00043 | 0.01585 | −7.25 | 0.00049 | 0.01780 |
STM14_3931 | garL | alpha-dehydro-beta-deoxy-D-glucarate aldolase - Ascorbate and aldarate metabolism | −8.61 | 0.00102 | 0.01627 | −4.90 | 0.00912 | 0.08004 |
STM14_3019 | eutG | ethanolamine utilization protein - Glycolysis/Gluconeogenesis | −5.27 | 0.00321 | 0.03284 | −4.14 | 0.01051 | 0.08951 |
STM14_4543 | STM14_4543 | Pentose phosphate pathway - glycolysis | 5.97 | 0.00129 | 0.01736 | 4.58 | 0.01740 | 0.13379 |
STM14_0510 | phnW | 2-aminoethylphosphonate--pyruvate transaminase | −7.72 | 0.00054 | 0.01585 | −7.50 | 0.00045 | 0.01780 |
STM14_2683 | STM14_2683 | putative glutathione S-transferase - Tyrosine metabolism | −5.70 | 0.00188 | 0.02355 | −7.58 | 0.00051 | 0.01780 |
STM14_2875 | STM14_2875 | 5'-deoxynucleotidase - Purine metabolism | −5.33 | 0.00197 | 0.02439 | −4.12 | 0.00459 | 0.04503 |
STM14_3065 | purN | phosphoribosylglycinamide formyltransferase - Purine metabolism | −7.67 | 0.00042 | 0.01585 | −3.27 | 0.03169 | 0.21774 |
STM14_3067 | ppx | exopolyphosphatase - Purine metabolism | −3.58 | 0.01769 | 0.13909 | −7.17 | 0.00061 | 0.01780 |
STM14_3098 | ndk | nucleoside diphosphate kinase - Purine metabolism | −3.30 | 0.02444 | 0.17845 | −7.24 | 0.00080 | 0.01780 |
STM14_5248 | purA | adenylosuccinate synthetase - Purine metabolism | −9.50 | 0.00086 | 0.01627 | −9.28 | 0.00092 | 0.01780 |
STM14_1726 | ydhB | regulates a gene involved in the purine transport process - Purine metabolism | −7.94 | 0.00094 | 0.01627 | −7.70 | 0.00077 | 0.01780 |
STM14_2106 | oppF | oligopeptide transport protein | −6.64 | 0.00305 | 0.03249 | −6.19 | 0.00369 | 0.03830 |
STM14_1100 | focA | formate transporter | −7.89 | 0.00064 | 0.01585 | −7.67 | 0.00051 | 0.01780 |
STM14_1781 | ydgI | putative arginine:ornithine antiporter | −8.88 | 0.00113 | 0.01666 | −6.34 | 0.00374 | 0.03858 |
STM14_3252 | kgtP | alpha-ketoglutarate transporter | −7.99 | 0.00080 | 0.01585 | −3.35 | 0.04547 | 0.28272 |
STM14_4792 | trkH | potassium transporter | −8.06 | 0.00090 | 0.01627 | −4.09 | 0.01640 | 0.12740 |
STM14_2694 | yeiA | dihydropyrimidine dehydrogenase - Pyrimidine metabolism | −3.05 | 0.04936 | 0.30628 | −5.35 | 0.00259 | 0.02896 |
The red color in the table indicates statistical significance in Q-value and/or p-value <0.05.