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. 2024 Jul 17;11(7):232002. doi: 10.1098/rsos.232002

Table 1.

Model and simulation parameters used throughout the paper. We note that Nbir{10,25,50,100,150,200,250} realizations for 2D simulations and Nbir ∈ {1, 2, 3, 4, 5, 6, 7, 8, 9, 10} realizations for 1D simulations. As we discuss in the electronic supplementary material, S2, Nsim = 5 × 103 realizations for most EA ABM solutions of the cell movement model and Nsim = 103 for all EA ABM results of the cell birth and combined models. We set Nhist = 30 voxels for EA ABM solutions of the cell birth and combined models, and Nhist = Nbin for the cell movement model. (See figure captions for our Nbin values.) The values of RMM (and RXX, see electronic supplementary material, S1.3) were reported as repulsion strengths (i.e. RMM/ωMM) in [39].

parameter value description and motivation
RMM 0.00124 mm2 day−1 strength of melanophore repulsion potential in equation (2.3); based on [14,39]
AMM 0 mm2 day−1 strength of melanophore adhesion potential in equation (2.3); based on [14,39]
ωMM 0.02 mm melanophore repulsion interaction range in equation (2.3); based on [14,39]
aMM 0.012 mm melanophore adhesion interaction range in equation (2.3); based on [14,39]
dmax 0.2 mm maximum cell interaction distance in equation (2.2); based on [14,39]
dloc 0.075 mm maximum interaction range for cell birth in equation (2.6); based on [14] and chosen slightly larger than measurements of cell–cell distances [78,79]
Nbir varies number of positions selected uniformly at random per day for possible cell proliferation (e.g. differentiation from precursors) in equations (2.5) and (2.7)
c 1 cell lower bound for the number of cells in a short-range neighbourhood for cell proliferation in equations (2.5) and (2.7)
c+ 6 cells upper bound for the number of cells in a short-range neighbourhood for birth in equations (2.5) and (2.7); based on estimations of data [16,78] in [14]
tfinal 150 or 2000 days simulation end time (150 days in 2D and 2000 days in 1D)
Δtmove 0.01 or 0.1 days time step for numerical implementation of equation (2.2) and electronic supplementary material, equation (S3)
Δtbir 1 day time step for numerical implementation of cell birth in equations (2.5) and (2.7)
ΔtPDE 0.05 days time step for numerical implementation of equations (2.4), (2.8) and electronic supplementary material, equation (S6)
Δtrecord 1 day time step for recording data from model simulations
Nsim varies number of ABM realizations for computing EA cell densities
Nbin varies spatial discretization step for solving our continuous models
Nhist Nbin or 30 voxels spatial discretization step for binning simulation results for comparison