Table 1.
parameter | value | description and motivation |
---|---|---|
0.00124 mm2 day−1 | strength of melanophore repulsion potential in equation (2.3); based on [14,39] | |
AMM | 0 mm2 day−1 | strength of melanophore adhesion potential in equation (2.3); based on [14,39] |
0.02 mm | melanophore repulsion interaction range in equation (2.3); based on [14,39] | |
aMM | 0.012 mm | melanophore adhesion interaction range in equation (2.3); based on [14,39] |
dmax | 0.2 mm | maximum cell interaction distance in equation (2.2); based on [14,39] |
dloc | 0.075 mm | maximum interaction range for cell birth in equation (2.6); based on [14] and chosen slightly larger than measurements of cell–cell distances [78,79] |
Nbir | varies | number of positions selected uniformly at random per day for possible cell proliferation (e.g. differentiation from precursors) in equations (2.5) and (2.7) |
c− | 1 cell | lower bound for the number of cells in a short-range neighbourhood for cell proliferation in equations (2.5) and (2.7) |
c+ | 6 cells | upper bound for the number of cells in a short-range neighbourhood for birth in equations (2.5) and (2.7); based on estimations of data [16,78] in [14] |
tfinal | 150 or 2000 days | simulation end time (150 days in 2D and 2000 days in 1D) |
Δtmove | 0.01 or 0.1 days | time step for numerical implementation of equation (2.2) and electronic supplementary material, equation (S3) |
Δtbir | 1 day | time step for numerical implementation of cell birth in equations (2.5) and (2.7) |
ΔtPDE | 0.05 days | time step for numerical implementation of equations (2.4), (2.8) and electronic supplementary material, equation (S6) |
Δtrecord | 1 day | time step for recording data from model simulations |
Nsim | varies | number of ABM realizations for computing EA cell densities |
varies | spatial discretization step for solving our continuous models | |
Nhist | or 30 voxels | spatial discretization step for binning simulation results for comparison |