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. 2024 Jun 4;15(7):e01035-24. doi: 10.1128/mbio.01035-24

Fig 4.

A heatmap visualizes the results of comparing MCP structures, and a branching tree groups MCPs based on their structural similarity. Viruses with more similar MCP structures cluster closer together.

Comparison of the predicted structures of mriyavirus major capsid proteins (MCPs) with structures of MCPs of other members of the kingdom Bamfordvirae. The heat map reflects the z-scores obtained in structural comparisons of the MCPs using Dali (color gradient shown to the right of the heat map). The dendrogram shows clustering of the MCPs by the z-scores. The abbreviations are as follows: ACMV, Acanthamoeba castellanii medusavirus (BBI30317); ALV, Vibrio phage 1.020.O._10N.222.48.A2 (AUR82054); APMV, Acanthamoeba polyphaga mimivirus (ADO18196.2); ASFV, African swine fever virus (PDB id: 6ku9); BpV1, Bathycoccus sp. RCC1105 virus BpV1 (YP_004061587); CeV-01B, Chrysochromulina ericina virus 01B (YP_009173446); EhV-86, Emiliania huxleyi virus 86 (YP_293839); Fausto, faustovirus (PDB id: 5j7o); Gamad_1, Ga0181388_1000587_17; Gamad_2, Ga0314846_0002864_7; Gamad_4, pleuro_group_Assembly_Contig_24_24; IIV3, invertebrate iridescent virus 3 (YP_654586); MV, Marseillevirus marseillevirus (YP_003407071); OtV5, Ostreococcus tauri virus 5 (YP_001648266); P1-CB, Polinton 1 of Caenorhabditis briggsae; P1-DY, Polinton 1 of Drosophila yakuba; PBCV-1, Paramecium bursaria chlorella virus 1 (PDB id: 5tip); PEV2, Pleurochrysis sp. endemic virus 2 (AUD57312); PLVs, polinton-like viruses; PM2, Pseudoalteromonas phage PM2 (PDB id: 2vvf); PRD1, Enterobacteria phage PRD1 (PDB id:1hx6); RanaV, Ranavirus maximus (YP_009272725); SkuldV1, Lokiarchaea virus SkuldV1 (UPO70972); STIV, Sulfolobus turreted icosahedral virus 1 (PDB id: 3j31); TsV, Tetraselmis virus 1 (YP_010783039); VvCV, Vermamoeba vermiformis clandestinovirus (QYA18424); Yara_1, Ga0364485_12008_8; Yara_2, Ga0466970_0005716_5; Yara_3, Yara_group_Contig_26_5; YaV, Yaravirus brasiliensis (QKE44414).