Table 3:

Statistical cross-validation of multiple scanning of genome-wide large insertion/deletion sequence marker sites

Reference genome	Female vs. male			Male vs. female
Mutation type	Insertion		Deletion	Insertion		Deletion
Variant length (>100 bp)	4,422		4,675	4,615		4,385
Chromosomes	FChr1	131	123	MChr1	140	143
	FChr2	194	211	MChr2	208	194
	FChr3	173	199	MChr3	179	161
	FChr4	181	207	MChr4	214	186
	FChr5	241	220	MChr5	212	237
	FChr6	254	292	MChr6	277	246
	FChr7	212	234	MChr7	231	211
	FChr8/10	333	341	MChr8	143	165
	FChr9	165	146	MChr9	345	333
	FChr11	191	217	MChr10	217	179
	FChr12	157	160	MChr11	159	153
	FChr13	205	187	MChr12	185	203
	FChr14	158	193	MChr13	196	162
	FChr15	182	185	MChr14	186	188
	FChr16	169	202	MChr15	190	160
	FChr17	204	220	MChr16	228	196
	FChr18	168	159	MChr17	159	167
	FChr19	175	183	MChr18	168	171
	FChr20	168	184	MChr19	174	166
	FChr21	185	203	MChr20	205	183
	FChr22	161	183	MChr21	184	167
	FChr23	200	219	MChr22	225	211
	FChr24	215	207	MChr23	190	203
SyRI-based scanning of male and female mutant sites (≥100 bp)		2,116		2,045
Intersection of the 2 methods		1,791 (84.64%)		1,749 (85.53%)