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. 2024 Jun 21;10(1):veae047. doi: 10.1093/ve/veae047

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© The Author(s) 2024. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact reprints@oup.com for reprints and translation rights for reprints. All other permissions can be obtained through our RightsLink service via the Permissions link on the article page on our site–for further information please contact journals.permissions@oup.com.

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Figure 3. — Neighbor-joining tree of previously published MDV strains and the new consensus genomes of CVI988 and Md5. Consensus genomes of CVI988, Md5, and 33 additional MDV strains from North America, Asia, and Europe were aligned using MAFFT (Supplementary Table S1 for full list of comparison strains and accession IDs). The resulting MSA was used to infer a neighbor-joining tree using Geneious Prime v2023.0.4. CVI988 (blue/upper set of arrows) and Md5 (red/lower set of arrows) genomes used for comparative analyses are highlighted. “CVI988-like” strains such as HC/0803 that cluster near the CVI988 strain genomes are further illustrated in Fig. 4.