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. 2024 Feb 14;25:69. doi: 10.1186/s12859-024-05679-9

Table 7.

Top 10 Gene Ontology (GO) Biological Processes enriched with ToppFun in ToppGene Suite

GO ID GO Biological Bonferroni Genes
Process P-value
GO:0001944 Vasculature development 2.71E-10 DAB2,EPHB3,SLIT2,BIRC5,TCF4,THBS2,SPARC,MMP2
TNFRSF1B,THY1,DCN,IGFBP7,PDGFRB,LOX,HLA-F,COL1A2
GO:0001568 Blood vessel development 2.10E-09 DAB2,EPHB3,SLIT2,BIRC5,TCF4,THBS2,SPARC,MMP2
THY1,DCN,IGFBP7,PDGFRB,LOX,HLA-F,COL1A2
GO:0048514 Blood vessel morphogenesis 9.21E-09 DAB2,EPHB3,SLIT2,BIRC5,TCF4,THBS2,SPARC,MMP2
THY1,DCN,IGFBP7,PDGFRB,LOX,HLA-F
GO:0030198 Extracellular matrix organization 1.40E-08 COL6A1,MFAP4,SPARC,MMP2,TNFRSF1B
DCN,TIMP2,LOX,VCAN,BGN,COL1A2
GO:0043062 Extracellular structure organization 1.43E-08 COL6A1,MFAP4,SPARC,MMP2,TNFRSF1B
DCN,TIMP2,LOX,VCAN,BGN,COL1A2
GO:0045229 External encapsulating structure organization 1.53E-08 COL6A1,MFAP4,SPARC,MMP2,TNFRSF1B
DCN,TIMP2,LOX,VCAN,BGN,COL1A2
GO:0072359 Circulatory system development 1.83E-08 DAB2,EPHB3,SLIT2,BIRC5,TCF4,THBS2,SPARC,MMP2,TNFRSF1B
THY1,DCN,IGFBP7,PDGFRB,LOX,VCAN,HLA-F,COL1A2
GO:0001525 Angiogenesis 2.46E-08 DAB2,EPHB3,SLIT2,BIRC5,TCF4,THBS2,SPARC
MMP2,THY1,DCN,IGFBP7,PDGFRB,HLA-F
GO:0035295 Tube development 1.39E-07 DAB2,EPHB3,SLIT2,SPDEF,BIRC5,TCF4,THBS2,SPARC,MMP2
THY1,DCN,IGFBP7,PDGFRB,LOX,VCAN,HLA-F
GO:0035239 Tube morphogenesis 1.02E-06

DAB2,EPHB3,SLIT2,BIRC5,TCF4,THBS2,SPARC,MMP2

THY1,DCN,IGFBP7,PDGFRB,LOX,HLA-F