Table 9.
Genes corresponding to CpG sites. Top 10 Pathways enriched with ToppFun in ToppGene Suite
| ID | Pathway | Source | Bonferroni P-value |
Genes |
|---|---|---|---|---|
| M12868 | Pathways in cancer | MSigDB C2 BIOCARTA | 0.001107 | TGFB3,FGF2,WNT2,RASSF1,RARA |
| M39427 | Pluripotent stem cell differentiation pathway | MSigDB C2 BIOCARTA | 0.002385 | TGFB3,FGF2,WNT2 |
| 83105 | Pathways in cancer | BioSystems: KEGG | 0.002876 | TGFB3,FGF2,WNT2,RASSF1,RARA |
| M5889 | Ensemble of genes encoding extracellular | MSigDB C2 BIOCARTA | 0.02151 | ADAMTS12,IGFBP7,TGFB3 |
| matrix and extracellular | IL1RN,FGF2,WNT2 | |||
| matrix-associated proteins | ||||
| M5883 | Genes encoding secreted soluble factors | MSigDB C2 BIOCARTA | 0.04072 | TGFB3,IL1RN,FGF2,WNT2 |
| M5885 | Ensemble of genes encoding ECM-associated | MSigDB C2 BIOCARTA | 0.06319 | ADAMTS12,TGFB3,IL1RN, |
| proteins including ECM-affilaited proteins, | FGF2,WNT2 | |||
| ECM regulators | ||||
| and secreted factors | ||||
| 138010 | Glypican 1 network | BioSystems: Pathway Interaction | 0.06838 | TGFB3,FGF2 |
| Database | ||||
| M33 | Glypican 1 network | MSigDB C2 BIOCARTA | 0.07382 | TGFB3,FGF2 |
| 749777 | Hippo signaling pathway | BioSystems: KEGG | 0.07853 | TGFB3,WNT2,RASSF1 |
| M12095 | Signal transduction through IL1R | MSigDB C2 BIOCARTA | 0.09762 | TGFB3,IL1RN |