Table 2.
18 proteins differentially expressed (p-value ≤ 0.001, fold change ≥ 3 and with proteins with ≥ 5 peptides matched) between Ross 508 (White chicken) and AZ Extra Heavy Red chicken genetic lines (Red chicken) following label-free LC–MS/MS (see Table S2 for the full list of protein that were differentially expressed in the comparison).
| UniProta) | Gene name | Description | Peptidesb | Scorec | Anova (p) | Fold change | Highest conditiond |
|---|---|---|---|---|---|---|---|
| A0A1D5PY67 | ANXA6 | Annexin | 23 | 57.66 | 0.000023 | 8.84 | White |
| A0A1D5NW68 | ALB | Serum albumin | 20 | 59.95 | 0.000207 | 3.14 | White |
| A0A0A0ADU8 | N301_11515 | Alpha-2-macroglobulin-like 1 | 18 | 51.31 | 0.000367 | 6.56 | White |
| A0A493T9F7 | C3 | Complement C3 | 16 | 44.06 | 0.000049 | 16.14 | White |
| A0A1C9KD18 | ANXA2 | Annexin | 13 | 32.66 | 0.000001 | 10.95 | White |
| A0A3Q2TXL9 | STIP1 | Stress induced phosphoprotein 1 | 10 | 22.96 | 0.000013 | 3.60 | White |
| F1NVB3 | UNC45B | Unc-45 myosin chaperone B | 10 | 21.70 | 0.000492 | 3.16 | White |
| G1NQ91 | POSTN | Periostin | 10 | 29.40 | 0.000798 | 41.30 | White |
| E1BQC2 | TF | Ovotransferrin | 9 | 25.98 | 0.000198 | 9.07 | White |
| Q5ZIY8 | RNH1 | Ribonuclease inhibitor | 8 | 23.84 | 0.000006 | 7.05 | White |
| F1P593 | HSPB1 | Heat shock protein beta-1 | 6 | 20.70 | 0.000011 | 38.90 | White |
| A0A1D5P9Z1 | ACP1 | Low molecular weight phosphotyrosine protein phosphatase | 6 | 15.37 | 0.000120 | 3.11 | White |
| O93601 | apoAIV | Apolipoprotein AIV | 6 | 16.34 | 0.000295 | 5.46 | White |
| F1NYB1 | TUBB4B | Tubulin beta chain | 6 | 13.39 | 0.000980 | 22.64 | White |
| A0A452J7T9 | CFL2 | Cofilin-2 | 5 | 18.38 | 0.000294 | 3.61 | White |
| A0A1D5PAE8 | LTA4H | Leukotriene A(4) hydrolase | 5 | 12.41 | 0.000693 | 7.91 | White |
| F1NRI3 | WDR1 | WD repeat-containing protein 1 | 5 | 10.01 | 0.000751 | 3.79 | White |
| F1NVD4 | ADSSL1 | Adenylosuccinate synthetase isozyme 1 | 5 | 13.85 | 0.000684 | 3.56 | Red |
Up-regulated protein in Ross 508 chicken (17 proteins) and AZ Extra Heavy Red chicken (1 protein).
aAccession number.
bPeptides used for quantitation.
cMASCOT score.
dShows proteins that were up-regulated in Ross 508 (White) or in AZ Extra Heavy Red chicken (Red).