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. 2024 Jul 9;13(7):512. doi: 10.3390/biology13070512

Figure 3.

Figure 3

Implications of the Decay Parameter and PCA Dimensionality on sc-PHENIX and MAGIC. The parameters are the same as in Figure 2B, with the only difference being that the decay values increase as the PCA dimensionality increases. Additionally, we fixed t = 5 sc-PHENIX knn = 30 and MAGIC knn = 5. This comparison aims to identify the optimal scenarios for using MAGIC and sc-PHENIX: a low knn value for MAGIC and a high knn value for sc-PHENIX. The dotted lines represent the global mean of the metric for all samples, with orange for sc-PHENIX and blue for MAGIC.