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. 2024 Jul 13;14(14):2059. doi: 10.3390/ani14142059

Table 1.

Putative functions for candidate genes detected by >1 window-based method in the Buryat and Wagyu breeds.

Functional Category Breed Consensus Interval Methods Gene Source
Cold Climate Adaptation Buryat 3:33600001-33705000 hapFLK, PBS GSTM3 [54,55]
Buryat 6:88788570-88838640 hapFLK, PBS CXCL8 [56]
Buryat 8:72603526-72650000 hapFLK, FST DOCK5 [57]
Buryat 19:42420001-42490000 hapFLK, PBS, DCMS STAT3 [58,59,60,61]
Wagyu 1:109350001-109425000 hapFLK, FST RSRC1 [62]
Wagyu 16:35455001-35525000 PBS, FST RGS7 [63]
Wagyu 16:63490001-63560000 hapFLK, PBS RGSL1 [64]
Feed Efficiency Traits and Metabolism Buryat 1:102340001-102410000 hapFLK, PBS SI [65,66]
Wagyu 1:109350001-109425000 hapFLK, FST SHOX2 [67,68]
Wagyu 2:103200001-103258854 hapFLK, FST SNORA70 [69]
Growth and Development Wagyu 1:109350001-109425000 hapFLK, FST SHOX2 [70,71,72]
Wagyu 2:90265001-90335000 hapFLK, PBS ALS2 [73]
Wagyu 2:93978974-94156953 hapFLK, DCMS NRP2 [74]
Wagyu 2:103200001-103258854 hapFLK, FST ABCA12 [75,76]
Wagyu 3:92470001-92610000 hapFLK, PBS GLIS1 [77,78]
Wagyu 5:29260001-29325368 hapFLK, PBS DIP2B [79]
Wagyu 6:115957434-116027698 hapFLK, PBS TNIP2 [80,81]
Wagyu 6:115957434-116027698 hapFLK, PBS FAM193A * [81]
Wagyu 28:29100001-29119970 hapFLK, FST P4HA1 [82]
Immunity and Resistance to Pathogens Buryat 3:12800001-12845000 PBS, FST FCRL5 [83,84,85]
Buryat 3:33600001-33705000 hapFLK, PBS EPS8L3 [86]
Buryat 6:88788570-88838640 hapFLK, PBS CXCL8 [87]
Buryat 19:42420001-42490000 hapFLK, PBS, DCMS STAT3 [88,89]
Wagyu 5:102242758-102367026 hapFLK, PBS WC1-12 [90,91,92]
Wagyu 20:23975001-24115000 hapFLK, PBS CDC20B [93]
Wagyu 20:23975001-24115000 hapFLK, PBS GZMA [93,94]
Wagyu 20:23975001-24115000 hapFLK, PBS GZMK [93,94]
Wagyu 20:23975001-24115000 hapFLK, PBS ESM1 [93,95]
Meat Quality Traits Buryat 6:77455001-77560000 hapFLK, PBS ADGRL3 [96]
Wagyu 1:109350001-109425000 hapFLK, FST RSRC1 [97]
Wagyu 5:29260001-29325368 hapFLK, PBS DIP2B [98]
Wagyu 5:102242758-102367026 hapFLK, PBS WC1-12 [99]
Wagyu 11:38600001-38675000 PBS, FST BTA-MIR-216B [100]
Milk traits Buryat 6:77455001-77560000 hapFLK, PBS ADGRL3 [101]
Reproduction Buryat 3:33600001-33705000 hapFLK, PBS GSTM3 [102]
Buryat 6:88788570-88838640 hapFLK, PBS CXCL8 [87]
Buryat 15:51651871-51696907 hapFLK, PBS NUMA1 [103,104]
Wagyu 1:109350001-109425000 hapFLK, FST RSRC1 [105]
Wagyu 2:90090001-90230000 hapFLK, PBS C2CD6 [106]
Wagyu 2:90265001-90335000 hapFLK, PBS ALS2 [73]
Wagyu 5:29260001-29325368 hapFLK, PBS DIP2B [107]
Wagyu 11:38600001-38675000 PBS, FST BTA-MIR-217 [108]
Wagyu 11:38600001-38675000 PBS, FST BTA-MIR-216A [109]
Wagyu 11:38600001-38675000 PBS, FST BTA-MIR-216B [110]

* A missense variant from this gene was detected by single-point FST analysis.