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[Preprint]. 2024 Jul 16:2024.07.15.24310412. [Version 1] doi: 10.1101/2024.07.15.24310412

Table 1.

Summary of estimated clock rates and RSV migration events between New Zealand and the rest of the world (BEAST2).

Rep Clock rate (subs/site/year) Number of introductions Number of exports
RSV-A 1* 8.79×10−4 (8.40×10−4, 9.13×10−4) 85.3 [83, 88] 2.94 [1, 5]
2 8.31×10−4 (7.95×10−4, 8.66×10−4) 81.9 [80, 84] 3.93 [3, 5]
3 8.25×10−4 (7.90×10−4, 8.59×10−4) 89.4 [84, 93] 2.15 [1, 5]
4 8.68×10−4 (8.29×10−4, 9.04×10−4) 83.4 [82, 85] 3.11 [2, 4]
5 8.52×10−4 (8.19×10−4, 8.87×10−4) 84.6 [82, 87] 3.71 [2, 6]
6 8.68×10−4 (8.32×10−4, 9.04×10−4) 80.2 [78, 82] 4.16 [3, 6]
RSV-B 1* 1.04×10−3 (1.00×10−3, 1.09×10−3) 100 [97, 104] 0.86 [0, 3]
2 1.00×10−3 (9.64×10−4, 1.05×10−3) 101 [97, 104] 0.57 [0, 1]

Each replicate contains a different subsample of genomes. Mean estimates (and 95% credible intervals) are rounded to 3 significant figures. MCMC chains that did not converge (replicates RSV-B 306) are omitted from the table.

*

These replicates are shown in Figure 4.