TABLE 2.
Informative-site analysis of 95CM61 and 96CM61
| Genome | Subtype | Region (nt) | No. of informative sitesa
|
||
|---|---|---|---|---|---|
| A | D | G | |||
| 95CM61.56 | A | 1208–1454 | 8 | 3 | 2 |
| G | 1509–1686 | 2 | 3 | 7 | |
| A | 1773–3007 | 49 | 15 | 16 | |
| 95CM61.20 | A | 1208–1346 | 6 | 2 | 1 |
| D | 1379–1456 | 1 | 8 | 0 | |
| G | 1509–1688 | 2 | 3 | 7 | |
| A | 1775–3004 | 49 | 17 | 16 | |
| 95CM61.34 | A | 1208–1454 | 8 | 2 | 2 |
| G | 1509–1686 | 1 | 2 | 8 | |
| D | 1760–2002 | 1 | 15 | 3 | |
| A | 2113–3016 | 36 | 14 | 12 | |
| 95CM61.49 | A | 1208–1346 | 6 | 2 | 2 |
| D | 1379–3006 | 23 | 85 | 25 | |
| 96CM61.2 | A | 1208–1454 | 9 | 2 | 2 |
| G | 1509–1686 | 0 | 2 | 8 | |
| D | 1760–2002 | 1 | 16 | 3 | |
| A | 2113–3019 | 43 | 15 | 12 | |
| 96CM61.4 | A | 1208–1346 | 5 | 2 | 1 |
| D | 1379–3021 | 20 | 84 | 24 | |
| 96CM61.5 | A | 1208–1454 | 9 | 2 | 2 |
| G | 1509–1686 | 0 | 2 | 8 | |
| D | 1760–3031 | 12 | 58 | 17 | |
a
The distribution of informative sites supporting each of three lineages is presented in columns A, D, and G. In column A, the apparent recombinant is most closely related to a representative of subtype A (HIV-1U455); in column D, it is most closely related to a representative of subtype D (HIV-1NDK); and in column G, it is most closely related to a strain of subtype G (HIV-192NG083.2).