Table 1.
General genome features of “Ca. Methanobrevibacter cononymphae” and related species.
| species | “Ca. Mbv. cononymphae” CfCl-M3 |
Mbv. curvatus
(GCA_001639295) |
Mbv. filiformis
(GCA_001639265) |
Mbv. cuticularis
(GCA_001639285) |
NOE (GCA_003315655) |
|---|---|---|---|---|---|
| Habitat | Intracellular/gut wall | Gut wall | Gut wall | Gut wall | Intracellular |
| Total length (Mb) | 2.71 (2.67d) | 2.41 | 2.61 | 2.61 | 1.91 |
| Contig | 244 | 232 | 295 | 169 | 70 |
| Completenessa (%) | 98.6 | 98.2 | 97.1 | 99.7 | 99.3 |
| G + C (%) | 27.2 | 25.7 | 27.0 | 26.8 | 25.3 |
| CDSb | 2319 (1834) | 1883 | 1985 | 1869 | 2175 |
| Coding density (%)b | 65.8 (59.7) | 68.5 | 68.5 | 66.2 | 68.3 |
| rRNA | 3 | 3 | 3 | 3 | 3 |
| tRNA | 28 | 31 | 30 | 32 | 33 |
| Pseudogenec | 29/174 (148) | 11/86 | 9/83 | 15/117 | 95/209 (187) |
a
Estimated using CheckM2 v.1.0.1.
b
Identified using Prodigal v2.6.3. Manually curated values are shown in parentheses.
c
Identified using Pgap/Pseudofinder with those within 1000 bp region from both contig ends being excluded. The number was manually curated for CfCl-M3 in this study and previously for NOE [57] and shown in parenthesis.
d
Total length with duplicated CDSs being excluded.