Table 3.
Public Resource | Description | Patient Data Type | Patient Count | Application Tasks | Paper |
---|---|---|---|---|---|
MIMIC-III | A critical care database, including de-identified patient data with ~ 60,000 Intensive Care Unit (ICU) admissions [93] | Structured; Unstructured | ~46,000 | Mortality Prediction | [14,43,57,58,61,65,73,77] |
Disease Prediction | [27,31,43,54,56,57,59,91,98,99] | ||||
Admission Prediction | [77,88] | ||||
Length-of-stay Prediction | [14,43,73] | ||||
Patient Similarity | [58] | ||||
24-hour decompensation | [14,43,61] | ||||
Intervention Prediction (ventilation, prescription, lab test order, etc.) | [32,54,55,65,98] | ||||
PPMI | A longitudinal patient dataset comprising clinical and behavioral variables, imaging, and specimen data of Parkinson’s disease patients. [94] | Structured | ~1000 | Patient subtyping | [67,74] |
ADNI | A longitudinal patient dataset consisting of assessments collected from selected patients in varied stages of Alzheimer’s Disease. [95] | Structured | ~600 | Patient subtyping | [74] |
i2b2 obesity challenge | 1237 discharge summaries from the Partners HealthCare Research Patient Data Repository. Each discharge summary was annotated with patient disease status corresponding to obesity and fifteen comorbidities of obesity. [96] | Unstructured | ~1000 | Phenotype Prediction | [62,63,90] |
eICU Collaborative Database | A combination of multiple critical care units across the United States. The data covers patients who were admitted to critical care units in 2014 and 2015. [97] | Structured | ~139,000 | Mortality medication, and diagnosis predictions | [42] |
MIMIC-III: https://mimic.physionet.org/.
PPMI: http://www.ppmi-info.org/.
ADNI: http://ida.loni.usc.edu/.