Table 3.

Summary of Peptide Recovery Pre- and Post-Matrix Matching

	Peptide recovery (%)
Peptide	After 15 hours		After 30 hours
	No matrix	With matrix	No matrix	With matrix
Ame1	102.2	101.5	93.4	105.9
Cbf1	86.5	95.6	63.9	109.8
Cbf2	103.9	106.0	74.1	110.1
Cep3	82.3	105.4	55.4	105.3
Chl4	96.4	103.1	64.7	113.6
Cnn1	0.0	89.5	0.0	46.1
Cse4	5.4	109.6	0.1	100.7
Ctf13	84.4	109.1	59.4	108.0
Ctf19	46.0	116.9	22.5	122.0
Ctf3	75.2	114.0	48.1	109.6
Dsn1	85.8	121.6	51.0	118.9
Hhf1	52.9	131.9	29.2	117.5
Hht1	93.0	114.4	64.6	124.8
Hta2	72.4	101.3	44.3	94.1
Htb2	90.7	99.7	63.7	110.3
Iml3	95.1	94.1	74.5	104.2
Mcm21	103.1	102.3	86.7	113.1
Mif2-1	89.1	102.9	64.0	112.8
Mif2-2	5.0	111.1	0.0	89.8
Mtw1	9.3	118.4	2.5	102.4
Ndc80	68.6	101.2	41.3	109.0
Nkp1	88.6	98.7	60.2	106.3
Nkp2	99.6	102.8	74.8	106.8
Okp1	103.9	102.1	71.6	112.6
Spc105	88.0	100.5	60.7	99.2

Red text with red highlights indicates peptide recovery < 70%.