Table 1.
Details regarding the breakpoints and the disrupted genes for the cases highlighted in this manuscript. Genomic coordinates refer to GRCh38/hg38
| Subject_ID | break | chr | break_start | break_end | gene_start | gene_end | strand | gene_name | gene_type |
|---|---|---|---|---|---|---|---|---|---|
| DGAP148 | 1 | chrX | 39882591 | 39882592 | . | . | . | . | . |
| DGAP148 | 2 | chr11 | 127040509 | 127040509 | 127021736 | 127172363 | + | ENSG00000255087 | lncRNA |
| DGAP191 | 1 | chr5 | 89411065 | 89411070 | 88883328 | 89466398 | + | MEF2C-AS1 | lncRNA |
| DGAP191 | 2 | chr7 | 94378248 | 94378255 | 94278680 | 94395608 | - | ENSG00000285090 | lncRNA |
| DGAP218 | 1 | chr5 | 24272189 | 24272193 | . | . | . | . | . |
| DGAP218 | 2 | chr5 | 89105026 | 89105031 | 88883328 | 89466398 | + | MEF2C-AS1 | lncRNA |
| DGAP245 | 1 | chr3 | 36927650 | 36927959 | 36826819 | 36945057 | - | TRANK1 | protein_coding |
| DGAP245 | 2 | chr14 | 29276109 | 29276117 | 28936889 | 29372406 | + | ENSG00000258028 | lncRNA |
| DGAP245 | 2 | chr14 | 29276109 | 29276117 | 29210986 | 29392048 | - | ENSG00000257522 | lncRNA |
| DGAP353 | 1 | chr14 | 65855359 | 65855360 | . | . | . | . | . |
| DGAP353 | 2 | chr17 | 61393812 | 61393841 | 61361668 | 61400243 | - | ENSG00000267131 | lncRNA |
| DGAP353 | 2 | chr17 | 61393812 | 61393841 | 61393455 | 61411555 | - | TBX2-AS1 | lncRNA |
| DGAP355 | 1 | chr3 | 181488756 | 181489591 | 180989762 | 181836880 | + | SOX2-OT | lncRNA |
| DGAP355 | 2 | chr9 | 74712100 | 74713321 | . | . | . | . | . |
| NIJ1 | 1 | chr8 | 78898169 | 78898172 | 78805293 | 78956082 | + | MITA1 | lncRNA |
| NIJ1 | 2 | chr14 | 29296328 | 29296331 | 28936889 | 29372406 | + | ENSG00000258028 | lncRNA |
| NIJ1 | 2 | chr14 | 29296328 | 29296331 | 29210986 | 29392048 | - | ENSG00000257522 | lncRNA |