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. 2024 Jun 27;27(7):110395. doi: 10.1016/j.isci.2024.110395
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Anti-Natriuretic peptides A antibody [EPR20247] Abcam Cat#ab209232
anti-cTnT polyclonal (rabbit) Abcam Cat#ab45932; RRID:AB_956386
anti-KCNQ1 polyclonal (rabbit) Abcam Cat#ab181798

Chemicals, peptides, and recombinant proteins

Tricaine/MS-222 Sigma-Aldrich Cat#A5040
Methyl cellulose Sigma-Aldrich Cat#M0512
Cas9 protein IDT Cat#1081058
HMR-1556 Sigma-Aldrich Cat#SML2354

Critical commercial assays

Hybridization Chain Reaction Probes and Hairpins Version 3 Molecular Instruments N/A
DreamTaq Hot Start Green PCR Master Mix Thermo Scientific Cat#K9022
LA Taq DNA polymerase TaKaRa Cat#RR042B
RNeasy Mini Kit QIAGEN Cat#74104
SuperScript IV VILO Master Mix Invitrogen Cat#11756050
KiCqStart SYBR Green qPCR ReadyMix Sigma-Aldrich Cat#KCQS00
iTaq Universal SYBR Green Supermix Bio-Rad Cat#1725121

Deposited data

Adult zebrafish heart proteomics data ProteomeXchange Consortium PRIDE Identifier: PXD038300

Experimental models: Organisms/strains

Zebrafish: AB wild-type ZIRC Cat#ZL1
Zebrafish: Tg(cmlc2:eGFP) Tsai et al., 200356 ZDB-TGCONSTRCT-070117-164
Zebrafish: Tg(gata1:dsRed) Zon et al., 200357 ZDB-TGCONSTRCT-070117-38

Oligonucleotides

crRNA for ttna gRNA: AAGCTCAGTACGTTCTTCAC IDT N/A
TracrRNA for ttna gRNA IDT N/A
Forward primer for ttnaΔ9 genotyping: GCCTTCCTTCCACATTTATTTTCCA IDT N/A
Reverse primer for ttnaΔ9 genotyping: CAGGCTATCAGTGCCCATCA IDT N/A
Translation-blocking morpholino against nppa: TCAGAATTAGTCCCCCGGCCATCTC Becker et al.58 N/A
Translation-blocking morpholino against nppb: TGTGAAGCGATTTCATGTCTCCTGA Becker et al.58 N/A
Control morpholino: CCTCTTACCTCAGTTACAATTTATA Gene Tools SKU:PCO-StandardControl-100
gRNA for generating Δ9 deletion in TTN: TGTTTCAGATGTTGCAATCA IDT N/A
HDR template for generating Δ9 deletion in TTN: CAATCATTGCACGCTTACTAATATCCTGGCCTT IDT N/A
Primers/Probes for qPCR IDT See Table S2

Software and algorithms

Imaris Bitplane https://imaris.oxinst.com/
GraphPad Prism GraphPad https://www.graphpad.com/
CHOPCHOP Labun et al.59 https://chopchop.cbu.uib.no/
AMT Imaging software V.7.0.1 Advanced Microscopy Techniques Corp. https://www.amtimaging.com/
Spinnaker SDK software FLIR https://www.flir.com/products/spinnaker-sdk/
Fiji/ImageJ Schindelin et al.60 https://fiji.sc/
Zen software Zeiss https://www.zeiss.com/microscopy/en/products/software/zeiss-zen.html
LabScribe ECG recording software iWorx https://iworx.com/labscribe/?v=7516fd43adaa
VisualSonics Echocardiogram Software Fujifilm VevoCQ
OpenCV Open Source Computer Vision Library https://opencv.org
scikit-learn Scikit-learn https://scikit-learn.org
pCLAMP 10 Moleculardevices https://support.moleculardevices.com/s/article/Axon-pCLAMP-10-Electrophysiology-Data-Acquisition-Analysis-Software-Download-Page

Other

High-speed camera FLIR BFS-U3-17S7M-C
Zebrafish ECG recording system iWorx ZS-200
Vevo2100 Imaging System Fujifilm Vevo2100
MX550S Ultrasound Transducer Fujifilm MX550S
Axopatch Amplifier Moleculardevices 200B
PatchStar Micromanipulator Scientifica https://www.scientifica.uk.com/products/scientifica-patchstar-micromanipulator
Nikon Eclipse Nikon Ti
Axon Digidata Moleculardevices 1550A