Table 1.
Sequencing statistics and alignment rate for the miRBase first mapping step. “C” colosEVs; “M” mEVs.
| Sample | miRBase alignment | ||||||
|---|---|---|---|---|---|---|---|
| Raw reads | Trimmed input reads | Uniq | Uniq % | Multimapper | Multi % | Alignment rate | |
| B1_C | 45,090,492 | 38,406,997 | 6,336,291 | 16.50% | 21,144,146 | 55.1% | 71.6% |
| B2_C | 23,835,663 | 19,523,663 | 3,160,046 | 16.19% | 9,702,945 | 49.7% | 65.9% |
| B3_C | 33,186,245 | 24,342,794 | 4,070,186 | 16.72% | 12,738,749 | 52.3% | 69.1% |
| B4_C | 25,621,270 | 21,459,235 | 3,650,778 | 17.01% | 12,317,639 | 57.4% | 74.4% |
| B5_C | 28,445,463 | 25,598,326 | 4,822,819 | 18.84% | 16,291,159 | 63.6% | 82.5% |
| B6_C | 35,297,007 | 28,794,068 | 5,851,514 | 20.32% | 15,951,001 | 55.4% | 75.7% |
| B7_C | 27,625,173 | 21,786,905 | 4,316,988 | 19.81% | 12,511,532 | 57.4% | 77.2% |
| B1_M | 46,868,375 | 37,915,680 | 6,077,164 | 16.03% | 18,189,437 | 48.0% | 64.0% |
| B2_M | 42,131,819 | 36,397,508 | 4,570,048 | 12.56% | 14,532,386 | 39.9% | 52.5% |
| B3_M | 32,171,579 | 26,518,421 | 4,078,482 | 15.38% | 12,734,551 | 48.0% | 63.4% |
| B4_M | 38,699,411 | 32,599,923 | 4,189,562 | 12.85% | 13,656,960 | 41.9% | 54.7% |
| B5_M | 25,322,872 | 21,707,379 | 2,779,265 | 12.8% | 9,354,233 | 43.1% | 55.9% |
| B6_M | 38,190,192 | 30,878,366 | 4,678,766 | 15.15% | 13,587,288 | 44,0% | 59.2% |
| B7_M | 31,895,400 | 25,705,878 | 3,692,451 | 14.36% | 10,594,270 | 41.2% | 55.6% |
| Mean | 33,884,354 | 27,973,939 | 4,448,169 | 16.00% | 13,807,593 | 49.8% | 65.8% |