TABLE 1.
Isolates used in molecular analysis of EV71a
| Strainb | Yr of isolation | Origin | Outcomec | GenBank accession no. |
|---|---|---|---|---|
| BrCr-CA-70 | 1970 | California | Encephalitis | U22521 |
| 2228-NY-72 | 1972 | New York | NA | AF135867 |
| 2604-AUS-74 | 1974 | Australia | Meningitis | AF135883 |
| 2605-AUS-74 | 1974 | Australia | Meningitis | AF135884 |
| 2608-AUS-74 | 1974 | Australia | Meningitis | AF135885 |
| 2609-AUS-74 | 1974 | Australia | Meningitis | AF135886 |
| 2610-AUS-74 | 1974 | Australia | NA | AF135887 |
| 2229-NY-76 | 1976 | New York | NA | AF135868 |
| 2230-NY-76 | 1976 | New York | NA | AF135869 |
| 2231-NY-77 | 1977 | New York | NA | AF135870 |
| 2232-NY-77 | 1977 | New York | NA | AF135871 |
| 2234-NY-77 | 1977 | New York | NA | AF135872 |
| 2235-NY-77 | 1977 | New York | NA | AF135873 |
| 2236-NY-77 | 1977 | New York | NA | AF135874 |
| 2237-NY-77 | 1977 | New York | NA | AF135875 |
| 2238-NY-77 | 1977 | New York | NA | AF135876 |
| 2239-NY-77 | 1977 | New York | NA | AF135877 |
| 10181-NM-78 | 1978 | New Mexico | NA | AF138675 |
| 1011-ND-79 | 1979 | North Dakota | NA | AF135864 |
| 2241-NY-79 | 1979 | New York | NA | AF135878 |
| 2243-NY-79 | 1979 | New York | NA | AF135879 |
| 2258-CA-79 | 1979 | California | Tremors | AF135880 |
| 2114-TN-80 | 1980 | Tennessee | NA | AF135866 |
| 2952-SD-81 | 1981 | South Dakota | NA | AF135888 |
| 3663-MA-82 | 1982 | Massachusetts | NA | AF135889 |
| 3885-UT-82 | 1982 | Utah | NA | AF135891 |
| 3874-ND-82 | 1982 | North Dakota | NA | AF135890 |
| 3982-OH-82 | 1982 | Ohio | Rash | AF135892 |
| 3984-OH-82 | 1982 | Ohio | NA | AF009538 |
| 2259-CA-82 | 1982 | California | Diarrhea | AF135881 |
| 4224-MA-82 | 1982 | Massachusetts | Encephalitis | AF135893 |
| 4323-UT-83 | 1983 | Utah | NA | AF135894 |
| 4599-OR-83 | 1983 | Oregon | CNS disorder | AF135895 |
| 4644-AR-83 | 1983 | Arkansas | NA | AF135896 |
| 4826-CT-83 | 1983 | Connecticut | NA | AF135897 |
| 4827-CT-83 | 1983 | Connecticut | NA | AF009529 |
| 5115-TX-83 | 1983 | Texas | NA | AF135898 |
| 0667-CHN-85 | 1985 | Republic of China | HFMD | AF135934 |
| 2260-CA-86 | 1986 | California | Fever | AF135882 |
| 2623-AUS-86 | 1986 | Australia | HFMD | AF135945 |
| 6762-OK-86 | 1986 | Oklahoma | NA | AF135900 |
| 1410-CA-86 | 1986 | California | Paralysis | AF009525 |
| 0915-MA-87 | 1987 | California | Meningitis | AF009549 |
| 0916-MA-87 | 1987 | Massachusetts | NA | AF009550 |
| 1061-TN-87 | 1987 | Tennessee | NA | AF009528 |
| 1413-CA-87 | 1987 | California | Paralysis | AF009527 |
| 2219-IA-87 | 1987 | Iowa | Meningitis | AF009539 |
| 2246-NY-87 | 1987 | New York | Paralysis | AF009542 |
| 6910-OK-87 | 1987 | Oklahoma | Rash | AF135901 |
| 7234-AK-87 | 1987 | Alaska | Paralysis | AF009522 |
| 7235-AK-87 | 1987 | Alaska | Respiratory failure | AF135902 |
| 7237-AK-87 | 1987 | Alaska | Diarrhea | AF135951 |
| 7238-AK-87 | 1987 | Alaska | Rash | AF135952 |
| 7289-NC-87 | 1987 | North Carolina | NA | AF135903 |
| 7298-AK-87 | 1987 | Alaska | Fatality | AF135904 |
| 7423-MS-87 | 1987 | Mississippi | Paralysis | U22522 |
| 7628-PA-87 | 1987 | Pennsylvania | Paralysis | AF009530 |
| 7629-PA-87 | 1987 | Pennsylvania | Gastroenteritis | AF009531 |
| 7630-PA-87 | 1987 | Pennsylvania | Gastroenteritis | AF009532 |
| 7631-PA-87 | 1987 | Pennsylvania | Gastroenteritis | AF009533 |
| 7632-PA-87 | 1987 | Pennsylvania | Gastroenteritis | AF135905 |
| 7633-PA-87 | 1987 | Pennsylvania | Gastroenteritis | AF009534 |
| 7635-WA-87 | 1987 | Washington | Meningitis | AF135906 |
| 7673-CT-87 | 1987 | Connecticut | NA | AF009535 |
| 7962-PA-87 | 1987 | Pennsylvania | Paralysis | AF009523 |
| 7968-PA-87 | 1987 | Pennsylvania | NA | AF009524 |
| 8102-WA-87 | 1987 | Washington | Meningitis | AF009526 |
| 8209-MD-87 | 1987 | Maryland | NA | AF009536 |
| 8279-PA-87 | 1987 | Pennsylvania | NA | AF009537 |
| 2222-IA-88 | 1988 | Iowa | Fever | AF009540 |
| 8149-AL-88 | 1988 | Alabama | NA | AF135907 |
| 8495-VA-88 | 1988 | Virginia | NA | AF135953 |
| 9166-TX-89 | 1989 | Texas | NA | AF135954 |
| 9243-OK-89 | 1989 | Oklahoma | NA | AF135955 |
| 9323-TX-89 | 1989 | Texas | NA | AF135956 |
| 9541-TX-89 | 1989 | Texas | NA | AF009557 |
| 9718-TX-89 | 1989 | Texas | NA | AF135957 |
| 9837-WA-89 | 1989 | Washington | NA | AF135958 |
| 9873-NM-89 | 1989 | New Mexico | NA | AF135959 |
| 9978-TX-89 | 1989 | Texas | Rash | AF009558 |
| 0359-TX-90 | 1990 | Texas | NA | AF135931 |
| 0390-TX-90 | 1990 | Texas | Otitis media | AF135932 |
| 1411-CA-90 | 1990 | California | NA | AF009551 |
| 0443-TX-90 | 1990 | Texas | NA | AF135933 |
| 0925-OR-91 | 1991 | Oregon | Tremors | AF009547 |
| 0926-OR-91 | 1991 | Oregon | NA | AF009548 |
| 2261-CA-91 | 1991 | California | Meningitis | AF135938 |
| 2583-CAN-91 | 1991 | Quebec, Canada | NA | AF135944 |
| 2262-CA-92 | 1992 | California | Meningitis | AF135939 |
| 2251-NY-93 | 1993 | New York | NA | AF009543 |
| 1873-CT-94 | 1994 | Connecticut | Fatality | AF009559 |
| 1919-NM-94 | 1994 | New Mexico | Rash | AF009552 |
| 1924-AZ-94 | 1994 | Arizona | NA | AF009553 |
| 1997-NC-94 | 1994 | North Carolina | NA | AF135936 |
| 2006-CT-94 | 1994 | Connecticut | Rash | AF009554 |
| 2007-CT-94 | 1994 | Connecticut | NA | AF009555 |
| 2253-NY-94 | 1994 | New York | NA | AF009544 |
| 2254-NY-94 | 1994 | New York | NA | AF009545 |
| 2263-CA-94 | 1994 | California | Paralysis | AF135940 |
| 2264-CA-94 | 1994 | California | Meningitis | AF009546 |
| 6658-COL-94 | 1994 | Colombia | Paralysis | AF135899 |
| 2037-MD-95 | 1995 | Maryland | NA | AF009556 |
| 2132-VA-95 | 1995 | Virginia | NA | AF135937 |
| 2640-AUS-95 | 1995 | Australia | NA | AF135946 |
| 2641-AUS-95 | 1995 | Australia | HFMD | AF135947 |
| 2642-AUS-95 | 1995 | Australia | Encephalitis | AF135948 |
| 2644-AUS-95 | 1995 | Australia | NA | AF135949 |
| 0731-MAA-97 | 1997 | Malaysia (Sarawak) | Fatality | AF135911 |
| 0756-MAA-97 | 1997 | Peninsular Malaysia | NA | AF135935 |
| 2286-TX-97 | 1997 | Texas | NA | AF135941 |
| 2355-OK-97 | 1997 | Oklahoma | NA | AF135942 |
| 2381-MA-97 | 1997 | Massachusetts | Fatality | AF135943 |
| 2814-MO-98 | 1998 | Missouri | Meningitis | AF135950 |
a
The sequences of BrCr-CA-70 and 7423-MS-87 were published previously (3). The sequence of CA16-G10-51 (24) (not shown) was included as an outgroup.
b
The last four or five characters of each strain name indicate the state or country where isolated and the year of isolation.
c
NA, not available. CNS, central nervous system.