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. 2024 Jul 11;10(14):e34531. doi: 10.1016/j.heliyon.2024.e34531

Table 5.

Estimated Free Energy of Binding, H-Bond Interactions and Hydrophobic Interactions between compounds and receptors.

Targets Compounds Pubchem ID Binding Affinity Hydrophobic Interactions Hydrogen bonding
AR Ajoene 5386591 −4.2 PRO694,ASN727,PHE826 GLN693,ASP695
Allixin 86,374 −6.3 LEU704,LEU707,MET749,PHE764,LEU873 GLY708
Catechin 9064 −8.5 LEU701,MET745,PHE764,LEU873 LEU707,LEU873,THR877
Luteolin 5,280,445 −8.3 VAL684,VAL715,ARG752 PRO682,GLN711,TRP751,LYS808
Nigellicine 11,402,337 −7.6 MET745,VAL746,MET749,PHE764,LEU873 ASN705,GLY708
Nigellidine 136,828,302 −7.5 ALA748,ARG752,LEU805 TRP751,ARG752,ASN756
Nigellimine 20,725 −5.5 GLU706, ASP890 ASP690, GLU706
Quercetin 5,280,343 −9 MET745 LEU704,GLY708,GLN711,MET745,ARG752,LEU873
Thymoquinone 10,281 −6.3 LEU704,LEU707,VAL746,PHE764,LEU873 PHE764
Doxorubicin 31,703 −7.1 LEU881,ILE882,PHE891,ALA896 HIS885, PHE891
PIK3R1 Ajoene 5386591 −4.7 ILE800,TYR836,ILE848,ILE932, VAL851, SER854
Allixin 86,374 −6 LEU704,LEU707,MET749,PHE764,LEU873 GLY708
Catechin 9064 −8.5 LEU701,MET745,PHE764,LEU873 LEU707,LEU873,THR877
Luteolin 5,280,445 −8.5 VAL684,VAL715,ARG752 PRO682,GLN711,TRP751,LYS808
Nigellicine 11,402,337 −7.4 MET745,VAL746,MET749,PHE764,LEU873 ASN705,GLY708
Nigellidine 136,828,302 −8.1 ALA748,ARG752,LEU805 TRP751,ARG752,ASN756
Nigellimine 20,725 −6.5 GLU706,ASP890 ASP690, GLU706
Quercetin 5,280,343 −8.4 MET745 LEU704,GLY708,GLN711,MET745,ARG752
Thymoquinone 10,281 −6.2 LEU704,LEU707,VAL746,PHE764,LEU873 PHE764
Doxorubicin 31,703 −9.5 TRP780,ILE800,ILE848,VAL850,ASN920,ILE932,ASP933 SER774,GLU849,VAL851,GLN859,ASP933