TABLE 3.
Genomic region (nucleotides)a | Mutations detected in persistent viral RNAb
|
|||
---|---|---|---|---|
MP1/M
|
MP1/G8
|
|||
REF | Sequencing | REF | Sequencing | |
21–583 | − | − | + | 269 (C-U) |
475–2133 | − | NS | − | NS |
2121–3993 | − | NS | + | NS |
3339–4392 | − | NS | − | NS |
4388–5523 | − | NS | + | NS |
5508–6668 | + | 6249 (GCA-GCRc) (Ala-Ala) | + | 5787 (GGU-GGC) (Gly-Gly) |
6280–7388 | − | NS | + | NS |
Nucleotide numbers indicate the genomic region screened and exclude the primer-binding region of the amplicon. The numbering system is based on alignment of partial-sequence information for MP1 with the complete sequence of CVB1 published for the pNI4 clone.
Results of REF analysis indicate whether altered migration either was (+) or was not (−) observed for restriction fragments within a given genomic region. Summarized sequence information indicates that there were no sequence changes detected within a region (−) or that the region was not sequenced (NS). Mutations are reported as the nucleotide position of the mutation followed by the base change and the codon change for coding sequences.
R = A or G.