Table 2.
Patterns of ASV dominance and superdominance among the 102 DWV-positive samples. (A) Tabulation of the identity and clade of the most common 1st, 2nd and 3rd most abundant ASVs, ranked by the frequency of the most common superdominant ASV. ‘Singletons’ refers all those instances combined where a particular ASV only is (super)dominant in a single colony. The clade of each ASV is indicated in brackets (B) Number and percentage of colonies where the proportion of reads ascribed to the 1st, 2nd, 3rd, 4th and 5th most abundant ASV exceeds the indicated percentage.
| A | ASV dominance & superdominance | |||||
| ASV superdominance | 1st ASV | 2nd ASV | 3rd ASV | |||
| 1st superdominant ASV | ASV10 (DWV-A) | ASV23 (DWV-B) | ASV3 (DWV-C) | |||
| 2nd superdominant ASV | ASV3 (DWV-C) | ASV24 (DWV-B) | ASV24 (DWV-B) | |||
| 3rd superdominant ASV | ASV1 (DWV-A) | ASV3 (DWV-C) | ASV23 (DWV-B) | |||
| 4th superdominant ASV | ASV24 (DWV-B) | ASV10 (DWV-A) | ASV10 (DWV-A) | |||
| 5th superdominant ASV | ASV13 (DWV-A) | ASV13 (DWV-A) | ASV13 (DWV-A) | |||
| 6th superdominant ASV | ASV16 (DWV-C) | ASV1 (DWV-A) | ASV1 (DWV-A) | |||
| 7th superdominant ASV | ASV39 (DWV-C) | ASV39 (DWV-C) | ASV43 (DWV-A) | |||
| 8th superdominant ASV | ASV23 (DWV-B) | ASV50 (DWV-A) | ASV80 (DWV-A) | |||
| 9th superdominant ASV | ASV33 (DWV-A) | ASV173 (DWV-C) | ASV114 (DWV-C) | |||
| 10th superdominant ASV | Singletons | ASV80 (DWV-A) | ASV30 (DWV-C) | |||
| 11th superdominant ASV | Singletons | Singletons | ASV144 (DWV-B) | |||
| 12th superdominant ASV | Singletons | Singletons | ASV36 (DWV-B) | |||
| 13th superdominant ASV | Singletons | Singletons | ASV106 (DWV-B) | |||
| 14th superdominant ASV | Singletons | Singletons | ASV165 (DWV-A) | |||
| 15th superdominant ASV | Singletons | Singletons | Singletons | |||
| B | DWV quasispecies ASV composition | |||||
| Proportion ASV in sample | ||||||
| Number of colonies |
>10% | >20% | >30% | >40% | ||
| 1st ASV | 102 | 102 | 101 | 95 | ||
| 2nd ASV | 47 | 27 | 15 | 3 | ||
| 3rd ASV | 14 | 4 | 0 | 0 | ||
| 4th ASV | 3 | 0 | ||||
| 5th ASV | 0 | |||||
| Proportion ASV in sample | ||||||
| Percentage of colonies |
>10% | >20% | >30% | >40% | ||
| 1st ASV | 100.0 | 100.0 | 99.0 | 93.1 | ||
| 2nd ASV | 46.1 | 26.5 | 14.7 | 2.9 | ||
| 3rd ASV | 13.7 | 3.9 | 0.0 | 0.0 | ||
| 4th ASV | 2.9 | 0.0 | ||||
| 5th ASV | 0.0 | |||||