Table 3.
The basic cp. Genomes information of four Synotis species
| Category | Gene group | Gene name |
|---|---|---|
| Photosynthesis | Subunits of photosystem I | psaA, psaB, psaC, psaI, psaJ |
| Subunits of photosystem II | psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ | |
| Subunits of NADH dehydrogenase | ndhA*, ndhB*(2), ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK | |
| Subunits of cytochrome b/f complex | petA, petB*, petD*, petG, petL, petN | |
| Subunits of ATP synthase | atpA, atpB, atpE, atpF*, atpH, atpI | |
| Large subunit of rubisco | rbcL* | |
| Self-replication | Proteins of large ribosomal subunit | rpl14, rpl16*, rpl2*(2), rpl20, rpl22, rpl23(2), rpl32, rpl33, rpl36 |
| Proteins of small ribosomal subunit | #rps19, rps11, rps12**(2), rps14, rps15, rps16*, rps18, rps19, rps2, rps3, rps4, rps7(2), rps8 | |
| Subunits of RNA polymerase | rpoA, rpoB, rpoC1*, rpoC2 | |
| Ribosomal RNAs | rrn16(2), rrn23(2), rrn4.5(2), rrn5(2) | |
| Transfer RNAs | trnA-UGC*(2), trnC-GCA, trnD-GUC, trnE-UUC, trnF-GAA, trnG-GCC, trnG-UCC*, trnH-GUG, trnI-CAU(2), trnI-GAU*(2), trnK-UUU*, trnL-CAA(2), trnL-UAA*, trnL-UAG, trnM-CAU, trnN-GUU(2), trnP-UGG, trnQ-UUG, trnR-ACG(2), trnR-UCU, trnS-GCU, trnS-GGA, trnS-UGA, trnT-GGU, trnT-UGU, trnV-GAC(2), trnV-UAC*, trnW-CCA, trnY-GUA, trnfM-CAU | |
| Other genes | Maturase | matK |
| Protease | clpP** | |
| Envelope membrane protein | cemA | |
| Acetyl-CoA carboxylase | accD | |
| c-type cytochrome synthesis gene | ccsA | |
| Translation initiation factor | infA | |
| Genes of unknown function | Conserved hypothetical chloroplast ORF | #ycf1, ycf1, ycf15(2), ycf2(2), ycf3**, ycf4 |
Notes: *: Gene with one introns, **: Gene with two introns, #: Pseudogene, (2): Gene with two copies