Table 2.
CircRNA Biogenesis | CircRNA Product | Biogenesis Mechanism | Refs. |
---|---|---|---|
Intron pairing-driven circularization | EcircRNAs or ElciRNAs |
The method by which EcircRNA and EIcircRNA cyclize is known as “direct back splicing” or intron pairing-driven cyclization; pre-mRNA containing ALU repeats is sheared to form EcircRNA following reverse-base complementary pairing. EIciRNAs are produced if introns are kept in between exons. | [19,31] |
RBP-induced circularization | RBPs (trans-acting factors) are Quaking, Muscleblind, and Fused-in Sarcoma. Circularization is facilitated by bridging comparable intronic regions. RBP dimerization links the 3′ and 5′ ends of circularized exons. | [32,33] | |
Lariat-induced circularization driven by spliceosomes | Exon circularization is spliceosome-dependent and is collected at the back-splicing site to help join the 5′-3′ donor–acceptor sites. Within lariat, internal splicing releases EcircRNAs or EIcircRNAs. | [34,35,36,37] | |
Intron self-cyclization | ciRNA | Intron self-cyclization is brought about by the 7 nucleotides of the G/U-rich sequence located near 1 exon and the 11 nucleotides of the C-rich sequence located near another exon in pre-mRNA. Three distinct kinds of circRNAs are produced: ciRNAs, EIcircRNAs, and EcircRNAs. A closed RNA loop (covalently EcircRNA) is formed when the 3′ end of an exon (5’ss) is joined to the 5′ end of either the same exon (single-exon circRNA) or an upstream exon (multiple-exon circRNA). |
[22,38,39,40] |
[CircRNA: circular RNA; ciRNA: intronic circRNA; EIcircRNA: exon–intron circular RNA; Ecirc: exonic circular RNA; RBP: RNA-binding protein].