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. 2000 Nov 1;28(21):4306–4316. doi: 10.1093/nar/28.21.4306

Table 1. Oligonucleotide sequences of single-stranded probes.

Probe Sequence
Wild-type 3′-UTR RNA 5′-UCC CUC CCA CCC AGC CCA CUU UUC CCC AAC CCU-3′
CONS DNA 5′-TCC CTC CCA CCC AGC CCA CTT TTC CCC AAC CCT-3′
CONS+SL DNA 5′-GCGTGT TCC CTC CCA CCC AGC CCA CTT TTC CCC AAC CAC ACG C-3′
CONS DNA D1 5′-TCA CTC CCA CCC AGC CCA CTT TTC ACC AAC ACT-3′
CONS DNA D3 5′-TCC CTC CCA CAC AGC CCA CTT TTC ACC AAC ACT-3′
CONS DNA D5 5′-TCC CTC CCA CCC AGC CCA CTT TTC ACC AAC CCT-3′
CONS DNA D6 5′-TCC CTC CCA CCC AGC CCA CTT TTC CCC AAC ACT-3′
CONS DNA D356 5′-TCC CTC CCA CAC AGC CCA CTT TTC ACC AAC ACT-3′
S40 (truncated recognition sequence and stem) 5′-GCG TGT TCC CTC CCA AGC CCA CTT TTC CCC AAC CAC ACG C-3′
S28 (truncated recognition sequence) 5′-TCC CTC CCA (CCC) AGC CCA CTT TTC CCC AAC C-3′
Poly(C) 5′-CCC CCC CCC CCC CCC CCC CCC CCC CCC CCC CCC-3′
Poly(G) 5′-GGG GGG GGG GGG GGG GGG GGG GGG GGG GGG GGG-3′
Mutant 2 5′-TCC CTC CCA CCC AGC CCA GAA AAG ATC TGG CCT-3′

Sequences in bold are stem–loop sequences. Underlined nucleotides indicate the C→A mutations used in EMSAs.