Table 1:
Summary of ape genome assemblies
| Sample information | Assembly stats (v2.0) Hapl (Hap2) or mat (pat) | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| Common name | Scientific name | Tissue | Sex | Accession | Total bases (Gbp) | contig N50 (Mbp) | Number of T2T contigs | Number of non-rDNA gaps or missing telomeres | QV |
| Chimpanzee (PTR) | Pan troglodytes | Lymphoblastoid | M | PRJNA916736 | 3.136 (3.030) | 146.29 (140.84) | 19 (17) | 0 (2) | 66.0 |
| Bonobo (PPA)* | Pan paniscus | Fibroblast/Lymphoblastoid | M | PRJNA942951 | 3.206 (3.072) | 147.03 (147.48) | 20 (19) | 0 (0) | 62.7 |
| Gorilla (GGO)* | Gorilla gorilla | Fibroblast | M | PRJNA942267 | 3.553 (3.350) | 151.43 (150.80) | 19 (22) | 4 (0) | 61.7 |
| Bornean orangutan (PPY) | Pongo pygmaeus | Fibroblast | M | PRJNA916742 | 3.164 (3.048) | 140.59 (137.91) | 15 (13) | 1 (2) | 65.8 |
| Sumatran orangutan (PAB) | Pongo abelii | Fibroblast | M | PRJNA916743 | 3.168 (3.077) | 146.20 (140.60) | 14 (13) | 2 (3) | 63.3 |
| Siamang (SSY) | Symphalangus syndactylus | Lymphoblastoid | M | PRJNA916729 | 3.235 (3.122) | 146.71 (144.67) | 24 (20) | 0 (5) | 66.4 |
| Average | - | 3.244 (3.117) | 146.38 (143.72) | 18.5 (17.3) | 1.2 (2) | 64.3 | |||
*
Sample with parental sequence data. QV represents the score from Illumina/HiFi hybrid-based approach.