. 2024 Jul 29;25(15):8290. doi: 10.3390/ijms25158290

Table 2.

Gene types of Tetrastigma chloroplast genome.

Category	Gene Group	Gene Name
Photosynthesis	Subunits of photosystem I	psaA, psaB, psaC, psaI, psaJ
	Subunits of photosystem II	psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbT, psbZ
	Subunits of NADH dehydrogenase	ndhA , ndhB (2), ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK
	Subunits of cytochrome b/f complex	petA, petB , petD , petG, petL, petN
	Subunits of ATP synthase	atpA, atpB, atpE, atpF , atpH, atpI*
	Large subunit of rubisco	rbcL
Self-replication	Proteins of large ribosomal subunit	rpl14, rpl16 , rpl2 (2), rpl20, rpl22, rpl23(2), rpl32, rpl33, rpl36
	Proteins of small ribosomal subunit	rps11, rps12 (2), rps14, rps15, rps16 , rps18, rps19, rps2, rps3, rps4, rps7(2), rps8, ψrps19-fragment*
	Subunits of RNA polymerase	rpoA, rpoB, rpoC1 , rpoC2*
	Ribosomal RNAs	rrn16(2), rrn23S(2), rrn4.5(2), rrn5(2)
	Transfer RNAs	trnA^UGC (2), trnC^GCA, trnD^GUC, trnE^UUC, trnF^GAA, trnG^GCC, trnH^GUG, trnI^CAU(2), trnI^GAU (2), trnK^UUU , trnL^CAA(2), trnL^UAA , trnL^UAG, trnM^CAU, trnN^GUU(2), trnP^UGG, trnQ^UUG, trnR^ACG(2), trnR^UCU, trnS^CGA , trnS^GCU, trnS^GGA, trnS^UGA, trnT^GGU, trnT^UGU, trnV^GAC(2), trnV^UAC , trnW^CCA, trnY^GUA, trnfM^CAU
Other genes	Maturase	matK
	Protease	clpP1 **
	Envelope membrane protein	cemA
	Acetyl-CoA carboxylase	accD
	c-type cytochrome synthesis gene	ccsA
	Translation initiation factor	infA
	Other	pafI *, pafII, pbf1*
Genes of unknown function	Conserved hypothetical chloroplast ORF	ycf1, ψycf1, ycf2(2)

Notes: Gene *: Gene with one intron; Gene **: Gene with two introns; ψGene: Pseudo gene; Gene(2): Number of copies of multi-copy genes.