TABLE 4.

Summary of poleroviruses, umbraviruses, and tlaRNAs identified in each plant sample by RNAseq and validated by RT-PCR and nanopore and/or Sanger sequencing.

Virus		Accession(s)	Host	Identified by RNAseq	Confirmed by RT-PCR and sequencing
Poleroviruses	TorCLV	PP888040	Parsley	6–19, 22	6, 8–22
		PP888041	Cilantro	23	23
	PaPV	PP683457; PP683458	Parsley	8, 9, 11, 13, 14, 20, 22	8–15, 18, 20
	FvPV	PP683459	Cilantro	23	23
	CtRLV	PP888039	Carrot	26–36	26–36
Umbraviruses	CMoV	PP766558	Carrot	26–29, 32,33, 35	26–29, 32,33, 35
	CMoMV	PP766560	Parsley	9–15, 20, 22	9–15, 20, 22,
		PP766559	Carrot	26–29, 31–33	26–29, 31–33
	WCMoV	PP766561	Parsley	8	8
		PP766562	Carrot	26–34, 36	26–34, 36
	PasUV1	PP766563	Parsley	8–15, 18, 20–22	8–15, 18, 20
		PP766564	Cilantro	23	not amplified
tlaRNAs	CtRLVaRNA a25	PP766566	Cilantro	24	24
		PP766565	Carrot	28, 29, 31	isolated/sequenced from pooled sample
	CtRLVaRNA alpha	PP766570	Carrot	26, 29	isolated/sequenced from pooled sample
	CtRLVaRNA beta	PP766567	Carrot	33, 34	not isolated
	CtRLVaRNA gamma	PP766568	Carrot	33	not isolated
	CtRLVaRNA sigma	PP766569	Parsley	8–10, 22	8–10, 22
	ALVEaRNA	PP766571	Parsley	9, 10, 20, 22	9, 10, 20, 22
		PP766572	Carrot	32	32