Table 1.
Xanthomonas HrpG* core regulon members
| Gene annotation | Orthogroup number | Average log2FCa | SD Average log2FC |
|---|---|---|---|
| Type III secretion system | |||
| hpaH/hpa2 | OG0000337 | 6.8 | 1.7 |
| hrcV | OG0000338 | 4.7 | 1.8 |
| hrcQ | OG0000339 | 5.6 | 2 |
| hrcC | OG0001932 | 6.6 | 1.5 |
| hrcT/hrpB8 | OG0001933 | 5.1 | 1.4 |
| hrpB7 | OG0001934 | 5.2 | 1.5 |
| hrcN/hrpB6 | OG0001935 | 5.4 | 1.5 |
| hrcL/hrpB5 | OG0001936 | 6.1 | 1.6 |
| hrpB4 | OG0001937 | 5.6 | 1.5 |
| hrpB3 | OG0001938 | 6.2 | 1.7 |
| hrpB2 | OG0001939 | 6.7 | 1.4 |
| hrpB1/hrpK | OG0001940 | 7 | 1.4 |
| hrcU | OG0001941 | 6.4 | 1.6 |
| hpaP/hrpC3 | OG0001942 | 5.5 | 1.4 |
| hrcR/hrpD2 | OG0001943 | 5.6 | 1.6 |
| hrcS | OG0001944 | 5.5 | 1.6 |
| hpaA | OG0001945 | 5.1 | 1.7 |
| hrcD | OG0001946 | 6 | 1.6 |
| hrpD6 | OG0001947 | 5.9 | 1.5 |
| hrpE | OG0001948 | 6.2 | 1.5 |
| hpaB | OG0001949 | 5.8 | 1.9 |
| Type III effectors | |||
| xopL | OG0000114 | 4.5 | 1.4 |
| xopR | OG0000535 | 3.4 | 1.1 |
| Others | |||
| phoC | OG0000410 | 3.3 | 1.6 |
| MFS transporter | OG0001668 | 3.5 | 1.5 |
| hrpX | OG0001966 | 4.6 | 1.2 |
a Of all shown orthogroups, at least one gene copy was significantly differentially regulated in all investigated strains (AdjPval < 0.05)