Table 1.
imaging parameters | avg. 3 nm/pix (120 ms exp.) | avg. 3 nm/pix (40 ms exp.) | peak 3 nm/pix (40 ms exp.) | avg. 3.6 nm/pix (40 ms exp.) | unit |
---|---|---|---|---|---|
x,y pixel size* | 3 | 3 | 3 | 3.6 | nm/pixel |
tile size (per size) | 6000 | 6000 | 6000 | 6000 | pix |
FOV size | 18 | 18 | 18 | 21.6 | μm |
pixels per tile | 36 | 36 | 36 | 36 | Mpixel |
supertile size (per side, 15% overlap b/w tiles) | 16200 | 16200 | 16200 | 16200 | pix |
overlap between supertiles | 600 | 600 | 600 | 600 | pix |
exposure time (exp.) | 120 | 40 | 40 | 40 | ms |
tiles per section (w/overlap) | 4356 | 4356 | 4140 | 2916 | tile |
supertiles per section (w/overlap) | 484 | 484 | 460 | 324 | supertile |
imaging time per section | 11.7 | 6.6 | 4.7 | 4 | minute |
transition overhead (tape translation, ROI definition, autofocus, etc.) | 2.2 | 2.2 | 1.8 | 2.2 | minute |
total time per section | 13.9 | 8.8 | 6.5 | 6.2 | minute |
burst imaging rate (imaging only) | 300 | 900 | 900 | 900 | Mpix/s |
montage imaging rate (w/ stage, Cricket) | 223 | 397 | 529 | 437 | Mpix/s |
net imaging rate (w/ stage, Cricket, transition) | 188 | 297 | 382 | 282 | Mpix/s |
effective imaging rate (w/ stage, Cricket, transition, overlap) | 142 | 224 | 288 | 213 | Mpix/s |
sections per day (1 scope at 24 h) | 103 | 163 | 221 | 232 | section |
time to image 1 mm³ (4 scopes at 24/7) | 54 | 35 | 26 | 24 | days |
time to image 1 mm³ (4 scopes at 65% uptime #) | 83 | 53 | 39 | 37 | days |
Based on 1 mm² section of 45 nm thick.
# 65% uptime accounts for microscope maintenance, imaging pause (Yin et al. 2020).
*Pixel size is different from resolution, which refers to the capability of an imaging system to perceive two point sources separately.
Typical TEM section thickness is 45 nm in z, while FIB-SEM offers a z resolution of 4 nm (Xu et al. 2017).