Table 1. Pathogenic germline variants in PDAC patients.
A: 1203 PDAC patients underwent expanded germline testing through the Detect Hereditary Pancreatic Cancer initiative and 20.4% were found to have PGVs. Ordering practitioners added a pancreatitis panel to 445 of the 1203 cases and CFTR pathogenic variants were prevalent and most common 53/445. The alterations are listed by prevalence (%). All variants listed are confirmed pathogenic. B: Pathogenic germline variants within CFTR found in patients with pancreatic adenocarcinoma
| A | |||
|---|---|---|---|
| CFTR | 53 (11.9%) | TP53 | 3 (0.2%) |
| BRCA2 | 29 (2.4%) | PRSS1 | 1 (0.2%) |
| ATM | 28 (2.3%) | BLM | 2 (0.2%) |
| SPINK1 | 8 (1.8%) | BARD1 | 2 (0.2%) |
| MUTYH | 21 (1.8%) | HOXB13 | 2 (0.2%) |
| CHEK2 | 20 (1.7%) | RAD50 | 2 (0.2%) |
| CTRC | 5 (1.1%) | MSH2 | 2 (0.2%) |
| NTHL1 | 9 (0.8%) | NF1 | 2 (0.2%) |
| BRIP1 | 9 (0.8%) | PMS2 | 2 (0.2%) |
| APC | 9 (0.7%) | VHL | 2 (0.2%) |
| BRCA1 | 7 (0.6%) | CDKN1C | 1 (0.1%) |
| MSH6 | 7 (0.6%) | EGFR | 1 (0.1%) |
| PALB2 | 7 (0.6%) | MITF | 1 (0.1%) |
| NBN | 6 (0.5%) | RET | 1 (0.1%) |
| WRN | 5 (0.4%) | MSH3 | 1 (0.1%) |
| CDKN2A (p16INK4a) | 5 (0.4%) | SDHB | 1 (0.1%) |
| FANCC | 4 (0.4%) | RAD51C | 1 (0.1%) |
| FH | 4 (0.3%) | CDKN2A (p14ARF) | 1 (0.1%) |
| SDHA | 4 (0.3%) | MEN1 | 1 (0.1%) |
| RECQL4 | 3 (0.3%) | MLH1 | 1 (0.1%) |
| CFTR Alteration Subtype | Other nomenclature | N (53) | Minor Allele Frequency (MAF)a |
| B | |||
| c.1210–34 TG[11]T[5] | 5T; TG11 | 24 | 0.033 (3.3% ie >1%) |
| c.1210–34 TG[12]T[5] | 5T; TG12 | 8 | <0.01 (<1%) |
| c.1210–34 TG[13]T[5] | 5T; TG13 | 1 | <0.01 (<1%) |
| NM_000492.3:c.1327G > T | p.Asp443Tyr | 1 | <0.01 (<1%) |
| NM_000492.3:c.1521_1523del | p.Phe508del; aka ΔF508 | 12 | 0.01 (1%) |
| NM_000492.3:c.1624G > T | p.Gly542 | 2 | <0.01 (<1%) |
| NM_000492.3:c.2657+5G > A | Intronic | 1 | <0.01 (<1%) |
| NM_000492.3:c.3454G > C | p.Asp1152His | 2 | <0.01 (<1%) |
| NM_000492.3:c.3846G > A | p.Trp1282 | 1 | <0.01 (<1%) |
| NM_000492.3:c.3909C > G | p.Asn1303Lys | 1 | <0.01 (<1%) |
Highest sub-population minor allele frequency as reported by gnomAD and 1000’s genome project.