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. Author manuscript; available in PMC: 2025 Jul 1.
Published in final edited form as: Nat Struct Mol Biol. 2024 Mar 6;31(7):1039–1049. doi: 10.1038/s41594-024-01245-2

Table 1 |.

Data collection and refinement statistics (related to Fig. 3)

JADE1PZP H3-JADE1PZP
(PDB 8GDX) (PDB 8GE0)
Data collection
Space group P213 P41 21 2
Cell dimensions
a, b, c (Å) 81.44, 81.44, 81.44 78.2, 78.2, 222.9
α, β, γ (°) 90, 90, 90 90, 90, 90
Resolution (Å) 2.74 (2.79–2.74)a 2.4 (2.49–2.40)a
Rpim, Rsym or Rmerge 17.2 (59.9) 2.8 (38.8)
I/σ(I) 8.5 (2.2) 28.2 (1.8)
Completeness (%) 99.8 (100) 99.9 (99.6)
Redundancy 5.2 (5.0) 39.8 (31.8)
Refinement
Resolution (Å) 28.79–2.74 49.5–2.4
No. reflections 4,908 27,953
Rwork/Rfree 0.2198/0.2687 0.2069/0.2412
No. atoms 1,286 4,298
 Protein 1,256 4,180
 Zn 5 15
 Water 13 103
B-factors 45.84 54.51
 Protein 45.58 54.66
 Zn 37.70 55.98
 Water 45.17 48.56
R.m.s. deviations
 Bond lengths (Å) 0.002 0.004
 Bond angles (°) 0.425 0.678
Ramachandran plot
 Most favored (%) 95.03 96.88
 Allowed (%) 4.97 3.12
 Outliers (%) 0.0 0.0
a

Values in parentheses are for highest-resolution shell.