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[Preprint]. 2024 Aug 6:2024.08.01.605695. [Version 1] doi: 10.1101/2024.08.01.605695

Table 1. Model comparison in real-world datasets.

We compare the predictive performance of flexTPC and Briere models. The best performing model has its values highlighted in bold. The model comparison criteria are indicated below the corresponding dataset. For datasets that were fit with a maximum likelihood approach (botrana, glacierbac, lhculex), we use mean leave one out cross-validated negative log-likelihood (LOOCV-nLL, lower is better) as the model comparison criterion to compare between the Briere1, Briere2, and flexTPC models. For the lhculex dataset, which was fit with a Bayesian approach, we use the Deviance Information Criterion (DIC, lower is better) as a model comparison criterion between a TPC functional form that was previously used in the literature to describe that trait (lit.function) and flexTPC.

Dataset

botrana life stage Briere1 Briere2 flexTPC

LOOCV-nLL eggs 2.00 −1.79 −2.20

instar 1 −1.46 −2.32 −2.64

instar 2 −2.24 −2.88 −3.08

instar 3 7.16 −1.55 −2.60

instar 4 2.14 −2.61 −2.51

instar 5 −0.48 −3.04 −3.12

pupae 10.80 −2.95 −3.95

glacierbac species (strain) Briere1 Briere2 flexTPC

LOOCV-nLL Arthrobacter sp (55) 0.27 −3.35 −3.61

Arthrobacter sp (60) 2.53 −3.13 −3.79

Pseudomonas (76) inf −2.23 −2.71

Arthrobacter glacialis (137) 0.70 −3.49 −4.46

Arthrobacter glacialis (158) −2.64 −4.23 −5.68

abcoli antibiotic Briere1 Briere2 flexTPC

LOOCV-nLL AMP −0.97 −1.33 −2.08

CLI −1.43 −1.47 −1.67

CPR −0.78 −1.23 −1.70

ERY −0.34 −0.70 −1.21

FOX −1.87 −1.88 −2.36

GEN −0.80 −1.00 −1.68

LVX −1.50 −1.50 −1.74

NTR −1.72 −1.89 −2.10

STR −0.96 −1.24 −1.78

TET −1.65 −1.70 −1.92

TMP −1.90 −1.91 −2.59

TOB −1.08 −1.39 −2.10

no drug −0.96 −1.17 −2.67

lhculex Culex pipiens

DIC trait lit. function lit. model flexTPC

EV quadratic 105.7 47.4

pLA quadratic −17.3 −14.8

MDR Briere1 −313.9 −312.8

lf linear 280.7 280.0

Culex quinquefasciatus

trait lit. function lit. model flexTPC

EV Briere1 979.0 370.2

pLA quadratic −42.6 −39.2

MDR Briere1 −152.0 −149.5

lf linear 110.3 113.5