Table 3.
Rate constants and kinetic parameters for the reaction of KYN with HsKYNase_93D9 and HsKYNase_66 derived by the global fitting of the experimental data (Fig. 2a, d) to the kinetic models shown in Fig. 2b and e
Rate constant and kinetic parameter | HsKYNase_93D9 | HsKYNase_66 | ||
---|---|---|---|---|
Best fit | 95% Confidence interval | Best fit | 95% Confidence interval | |
k1 | 0.24 μM−1s−1 | (0.22, 0.27) | 5.9 μM−1s−1 | (5.5, 6.4) |
k−1 | 4 s−1 | (3.31, 4.83) | 268 s−1 | Locked |
k2 | 0.79 s−1 | 0.77, 0.81) | 3.1 s−1 | (2.78, 3.28) |
k−2 | a0.34 s−1 | Locked | 19 s−1 | Locked |
k3 | 11.5 s−1 | Locked | 21 s−1 | (17.5, 24.8) |
k−3 | 0.001 μM−1s−1 | Locked | 0.001 μM−1s−1 | Locked |
k4 | 11 s−1 | Locked | 1.5 s−1 | Locked |
k−4 | 0.02 μM−1s−1 | Locked | 0.001 μM−1s−1 | Locked |
kcat (s−1) | 0.68 | - | 0.75 | - |
KM (μM) | 17.5 | - | 21.1 | - |
kcat/KM (M−1s−1) | 3.9 × 104 | - | 3.6 × 104 | - |
aRate constants shown in bold font were locked at the displayed value corresponding to either their lower or upper limit during the global fitting process.
Rate constants that were allowed to float during the global data fitting (shown in green font in Fig. 2b and e) are summarized with confidence intervals by contour analysis. Using Eqs. 3, 4 and 5 (Methods) and the rate constants from the pre-steady-state analysis that are listed above, the steady-state kinetic parameters kcat, KM and kcat/KM were estimated respectively.