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. 2024 Aug 16;19:61. doi: 10.1186/s13024-024-00747-3

Table 2.

Top associations from genome-wide association study

SNV Chr Position Ref Alt AF (Alt) β (Alt) P Gene eQTL/sQTL
Genome-Wide Significance (P < 5 × 10−8)
 rs62057121 17 45823394 G A 0.15 -1.32 7.45 × 10–78 MAPT LRRC37A4Pc*
 rs4420638 19 44919689 A G 0.20 -0.57 2.91 × 10–19 APOE TOMM40b
 rs7412 19 44908822 C T 0.06 0.87 9.57 × 10–16 APOE
 rs11708828 3 39458158 C T 0.46 -0.35 7.04 × 10–12 MOBP PRSAc
 rs10753232 1 180980990 C T 0.44 0.31 6.79 × 10–10 STX6 STX6a*
Loci of Potential Interest (P < 1 × 10−6)
 rs56251816 19 17750888 A G 0.22 0.35 6.57 × 10–08 FCHO1/MAP1S
 rs12817984 12 53410523 T G 0.16 -0.37 8.91 × 10–08 SP1 SP1a*
 rs4712314 6 17833813 G T 0.51 0.27 2.37 × 10–07 KIF13A
 rs74651308 12 21323155 G A 0.07 0.51 2.86 × 10–07 SLCO1A2
 rs111593852 7 138449166 C T 0.02 0.87 3.75 × 10–07 TRIM24
 rs367364 6 32052169 C T 0.13 -0.37 7.07 × 10–07 TNXB CYP21A1Pc*
 rs839764 1 43367703 T A 0.41 0.27 7.94 × 10–07 ELOVL1 TIE1a*
 rs12026659 1 221976623 G A 0.21 0.31 9.48 × 10–07 DUSP10

Chr Chromosome, Ref Reference allele, Alt Alternative allele, AF Allele frequency

*Represents the SNV regulates multiple genes, and the gene with the smallest P-value was shown here (eQTL/sQTL for the brain region was obtained through GTEx)

aSNVs with significant eQTL hits

bSNVs with significant sQTL hits

cSNVs with both eQTL and sQTL hits