TABLE 2.
Genomic regions under selection in Angus cattle identified by DCMS q values ≤ 0.05 and genes identified in those regions.
| Start | End | CHR | No of genes | Genes |
|---|---|---|---|---|
| 26683714 | 26745320 | 1 | 0 | None |
| 50460996 | 53793201 | 3 | 35 | MTF2 DIPK1A RPL5 SNORA66 SNORD21 U6 EVI5 ENSBTAG00000055274 5S_rRNA GFI1 RPAP2 GLMN C3H1orf146 BTBD8 ENSBTAG00000040248 EPHX4 BRDT ENSBTAG00000054884 ENSBTAG00000047443 TGFBR3 CDC7 HFM1 ENSBTAG00000054082 ENSBTAG00000046077 ENSBTAG00000055150 ZNF644 bta-mir-2285b-2 BARHL2 ZNF326 LRRC8D bta-mir-2285k-5 ENSBTAG00000050182 LRRC8C LRRC8B ENSBTAG00000038625 |
| 55238880 | 55468638 | 3 | 3 | PKN2 ENSBTAG00000051499 ENSBTAG00000051844 |
| 69475528 | 69894433 | 4 | 6 | 7SK SNX10 CBX3 HNRNPA2B1 NFE2L3 MIR148A |
| 48288996 | 48752060 | 5 | 4 | MSRB3 LEMD3 WIF1 U6 |
| 52011261 | 52117527 | 5 | 1 | TAFA2 |
| 53692271 | 54424033 | 5 | 3 | SLC16A7 ENSBTAG00000055198 ENSBTAG00000053531 |
| 58055499 | 59307814 | 5 | 42 | U6 ENSBTAG00000047825 ENSBTAG00000052093 ENSBTAG00000049329 ENSBTAG00000051156 ENSBTAG00000046778 ENSBTAG00000048295 ENSBTAG00000054507 ENSBTAG00000050480 ENSBTAG00000051165 ENSBTAG00000051462 ENSBTAG00000049219 ENSBTAG00000051274 ENSBTAG00000048779 OR6C76 OR6C75 ENSBTAG00000049581 ENSBTAG00000049184 ENSBTAG00000048408 ENSBTAG00000024691 ENSBTAG00000051265 ENSBTAG00000050381 ENSBTAG00000049213 ENSBTAG00000054097 ENSBTAG00000049016 ENSBTAG00000045922 ENSBTAG00000048168 ENSBTAG00000053702 ENSBTAG00000054733 ENSBTAG00000049913 ENSBTAG00000051198 ENSBTAG00000002913 ENSBTAG00000051990 ENSBTAG00000048864 ENSBTAG00000046446 ENSBTAG00000049753 ENSBTAG00000054193 OR10A7 ENSBTAG00000049751 ENSBTAG00000053229 ENSBTAG00000053772 ENSBTAG00000037629 |
| 1155763 | 1320935 | 6 | 1 | ENSBTAG00000051456 |
| 8724140 | 8824920 | 6 | 0 | None |
| 78535547 | 78939028 | 6 | 0 | None |
| 38009575 | 38227430 | 7 | 8 | FAF2 RNF44 CDHR2 GPRIN1 SNCB EIF4E1B TSPAN17 UNC5A |
| 44026848 | 44466715 | 7 | 22 | ENSBTAG00000012150 MEX3D MBD3 UQCR11 TCF3 ONECUT3 ATP8B3 REXO1 KLF16 ABHD17A ENSBTAG00000050118 SCAMP4 CSNK1G2 bta-mir-6120 BTBD2 SOWAHA SHROOM1 GDF9 UQCRQ LEAP2 AFF4 U6 |
| 89565309 | 94976398 | 8 | 42 | 5S_rRNA ENSBTAG00000052296 NXNL2 SPIN1 ENSBTAG00000051928 ENSBTAG00000054632 CDK20 FBXW12 ENSBTAG00000021235 MSANTD3 TMEFF1 CAVIN4 PLPPR1 5S_rRNA ENSBTAG00000025760 MRPL50 ZNF189 ALDOB PGAP4 RNF20 GRIN3A ENSBTAG00000050971 ENSBTAG00000030953 CYLC2 U6 SMC2 ENSBTAG00000047350 ENSBTAG00000013445 ENSBTAG00000050829 ENSBTAG00000052864 ENSBTAG00000053491 ENSBTAG00000016173 ENSBTAG00000050464 ENSBTAG00000000145 ENSBTAG00000052019 OR13C3 ENSBTAG00000049256 OR13C8 ENSBTAG00000048409 NIPSNAP3A ABCA1 SLC44A1 |
| 12701319 | 12716083 | 12 | 1 | TNFSF11 |
| 61100092 | 61130961 | 13 | 12 | ENSBTAG00000052743 DEFB121 DEFB122A DEFB122 DEFB123 DEFB124 REM1 HM13 bta-mir-12010 ID1 COX4I2 BCL2L1 |
| 62482399 | 65519468 | 13 | 71 | BPIFB4 BPIFA2A ENSBTAG00000031375 BPIFA2C ENSBTAG00000011704 BPIFA2B ENSBTAG00000031373 BPIFA3 BPIFA1 BPIFB1 BPIFB5 CDK5RAP1 ENSBTAG00000031354 SNTA1 ENSBTAG00000010131 ENSBTAG00000053051 ENSBTAG00000053797 NECAB3 C13H20orf144 E2F1 PXMP4 ZNF341 CHMP4B RALY EIF2S2 ASIP AHCY ENSBTAG00000050108 ENSBTAG00000046623 ITCH DYNLRB1 MAP1LC3A PIGU TP53INP2 NCOA6 GGT7 ACSS2 GSS MYH7B bta-mir-499 TRPC4AP EDEM2 PROCR MMP24 EIF6 FAM83C UQCC1 ENSBTAG00000053266 GDF5 ENSBTAG00000052250 CEP250 ENSBTAG00000030976 ERGIC3 ENSBTAG00000053187 SPAG4 CPNE1 RBM12 NFS1 ROMO1 RBM39 ENSBTAG00000053775 PHF20 5S_rRNA SCAND1 CNBD2 ENSBTAG00000052997 ENSBTAG00000053403 EPB41L1 ENSBTAG00000050801 AAR2 DLGAP4 |
| 67831405 | 69506639 | 13 | 8 | FAM83D ENSBTAG00000044690 DHX35 U6 ENSBTAG00000049087 ENSBTAG00000050378 ENSBTAG00000048871 MAFB |
| 22710076 | 24757731 | 14 | 24 | XKR4 TMEM68 TGS1 LYN RPS20 ENSBTAG00000045097 U1 MOS PLAG1 CHCHD7 ENSBTAG00000054153 SDR16C5 SDR16C6 PENK U6 BPNT2 FAM110B ENSBTAG00000047136 ENSBTAG00000051748 UBXN2B CYP7A1 U1 SDCBP NSMAF |
| 40378981 | 41205611 | 16 | 9 | TNFSF18 ENSBTAG00000052047 ENSBTAG00000053302 TNFSF4 ENSBTAG00000020550 AADACL4 DHRS3 VPS13D SNORA59A |
| 42527352 | 44175641 | 16 | 32 | MTOR ANGPTL7 EXOSC10 SRM MASP2 TARDBP CASZ1 PEX14 DFFA ENSBTAG00000045105 CORT CENPS PGD ENSBTAG00000048790 ENSBTAG00000048747 ENSBTAG00000054239 U6 UBE4B RBP7 NMNAT1 LZIC CTNNBIP1 CLSTN1 PIK3CD U6 5S_rRNA U6 TMEM201 SLC25A33 ENSBTAG00000049485 SPSB1 H6PD |
| 45628162 | 46172668 | 16 | 3 | ENSBTAG00000048839 ENSBTAG00000051176 CAMTA1 |
| 31142802 | 31450979 | 20 | 11 | ENSBTAG00000033187 NNT PAIP1 ENSBTAG00000049623 C20H5orf34 TMEM267 CCL28 HMGCS1 ENSBTAG00000048672 NIM1K ENSBTAG00000042376 |
| 69997413 | 70839780 | 20 | 8 | ENSBTAG00000050065 IRX2 U6 ENSBTAG00000054006 5S_rRNA IRX4 NDUFS6 ENSBTAG00000050317 |
| 2650859 | 3126131 | 21 | 2 | ATP10A U6 |
| 62909681 | 63080951 | 21 | 3 | 5S_rRNA ENSBTAG00000049199 ENSBTAG00000052737 |
| 25323298 | 25520626 | 28 | 9 | DDX21 KIFBP U6 SRGN ENSBTAG00000042264 ENSBTAG00000051145 VPS26A SUPV3L1 HKDC1 |